EST details — SGN-E394192

Search information 
Request: 394192Match: SGN-E394192
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183464Clone name: TUS-42-D22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183464 is on microarray TOM1 spot ID 1-1-3.4.1.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183464 [TUS-42-D22] Trace: SGN-T195517 EST: SGN-E394191 Direction: 3' Facility: INRA
Clone: SGN-C183464 [TUS-42-D22] Trace: SGN-T195980 EST: SGN-E394654 Direction: 3' Facility: INRA
Clone: SGN-C183464 [TUS-42-D22] Trace: SGN-T195980 EST: SGN-E399449 Direction: 3' Facility: INRA
Clone: SGN-C183464 [TUS-42-D22] Trace: SGN-T200481 EST: SGN-E399606 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E394192Length: 448 bp (838 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394192 [] (trimmed) CTGAGGCATGCAAGACTTTTGATCAAGCTAAGGAGGAATATAGCAAGGAGTTTGAAGAGAAGAAGACTGAGCTTCAACCCAAAGTTGTTGAAATT
TATGAAGCTGCTGCAGTTGAGATCAAGAGCTTAGTGAAGGAACCAAAGGGTGCAGGGCTGAAGAAAAACTCAGATGGGGTTCAGAAATTCCTTGA
TGACCTTGTCAAGATTGAATTTCCGGGATCAAAAGCTGTTAGCGAAGCAAGTTCAAACTTTGGGCCTTCCTATGTATCGGGCCCAATTATTTTTG
TGTTCGAAAAAGTTTCCACTTTCATAGTCACAGAAGATAAGAAGGAAGAGGAACCCGCGGCTGCTGATGACGTGCATGCACCAGCCGCCACGTCA
ACTGAAGAGGTGGAGGTGAAGGTGAAGGAGAAGGAAAAGGAGAATAGTTATTGAAGTCTGGAGAACCA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394192] SGN-U580472 Tomato 200607 Build 2 105 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195518 [Download][View] Facility Assigned ID: FA0AAD30DB11RM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.958 Expected Error Rate: 0.0067 Quality Trim Threshold: 14.5