Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-E394387

Search information 
Request: 394387Match: SGN-E394387
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182979Clone name: TUS-40-P17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182979 is on microarray TOM1 spot ID 1-1-8.4.5.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C133386 [cTOD-5-L11] Trace: SGN-T142773 EST: SGN-E329980 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E394387Length: 421 bp (850 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E394387 [] (trimmed) AAGAGGAGAAATGTGAATGTAATAAAACTAGTTGCCAATTGACATCAAATGCAGTTTGTATATAAAAGAAGTTTTGAAAGAAAATCAACATTTAT
CGTTATCAACATCATGAACTAAAGCAACTTGATATCACTATAATTTAGTTTTATTTGTAAAAATTGCTTTAAAAGGATTATGTTTATAACCATGC
TGGATTCTTCAATGGTGTCACAACTGCCTTTACTTGCAAGTAATTTTTGAAACCGTATTCTCCCTTTTCTCTTCCCTGACCACTCATCTTATAGC
CACCAAAAGGAATTGTAGCATCAAACCTATCAAAGCAATTAATCCATACCGTCCCAACTCTCAAGGGCTCGTGCCAACGTGTTTGCACTGGTCAA
TGTTCTGTGAAAATACTCCAGCCGCTAAACCATACCGAAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394387] SGN-U586121 Tomato 200607 Build 2 7 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195713 [Download][View] Facility Assigned ID: FA0AAD28CH09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.944 Expected Error Rate: 0.0126 Quality Trim Threshold: 14.5