EST details — SGN-E394387
Search information |
Request: 394387 | Match: SGN-E394387 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C182979 | Clone name: TUS-40-P17 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C182979 is on microarray TOM1 spot ID 1-1-8.4.5.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C133386 [cTOD-5-L11] | Trace: SGN-T142773 | EST: SGN-E329980 | Direction: 5' | Facility: TIGR |
Sequence |
Sequence Id: SGN-E394387 | Length: 421 bp (850 bp untrimmed) |
Status: Current Version | Direction: 5' |
>SGN-E394387 [] (trimmed)
AAGAGGAGAAATGTGAATGTAATAAAACTAGTTGCCAATTGACATCAAATGCAGTTTGTATATAAAAGAAGTTTTGAAAGAAAATCAACATTTAT
CGTTATCAACATCATGAACTAAAGCAACTTGATATCACTATAATTTAGTTTTATTTGTAAAAATTGCTTTAAAAGGATTATGTTTATAACCATGC
TGGATTCTTCAATGGTGTCACAACTGCCTTTACTTGCAAGTAATTTTTGAAACCGTATTCTCCCTTTTCTCTTCCCTGACCACTCATCTTATAGC
CACCAAAAGGAATTGTAGCATCAAACCTATCAAAGCAATTAATCCATACCGTCCCAACTCTCAAGGGCTCGTGCCAACGTGTTTGCACTGGTCAA
TGTTCTGTGAAAATACTCCAGCCGCTAAACCATACCGAAAA
CGTTATCAACATCATGAACTAAAGCAACTTGATATCACTATAATTTAGTTTTATTTGTAAAAATTGCTTTAAAAGGATTATGTTTATAACCATGC
TGGATTCTTCAATGGTGTCACAACTGCCTTTACTTGCAAGTAATTTTTGAAACCGTATTCTCCCTTTTCTCTTCCCTGACCACTCATCTTATAGC
CACCAAAAGGAATTGTAGCATCAAACCTATCAAAGCAATTAATCCATACCGTCCCAACTCTCAAGGGCTCGTGCCAACGTGTTTGCACTGGTCAA
TGTTCTGTGAAAATACTCCAGCCGCTAAACCATACCGAAAA
Unigenes |
Current Unigene builds | |||||
[SGN-E394387] | SGN-U586121 | Tomato 200607 | Build 2 | 7 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T195713 [Download][View] | Facility Assigned ID: FA0AAD28CH09RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.944 | Expected Error Rate: 0.0126 | Quality Trim Threshold: 14.5 |