EST details — SGN-E394615

Search information 
Request: 394615Match: SGN-E394615
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183421Clone name: TUS-42-C3
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183421 is on microarray TOM1 spot ID 1-1-6.3.2.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7981 [cLEC-40-O17] Trace: SGN-T32125 EST: SGN-E210061 Direction: 5' Facility: TIGR
Clone: SGN-C183421 [TUS-42-C3] Trace: SGN-T195941 EST: SGN-E399129 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E394615Length: 608 bp (865 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E394615 [] (trimmed) ATGTCACAAAAAAATAAGTTTTTTGTTTGTACATTTTCATTTAAAAGTTGTTTTGTACATCAGCCATCTACACCTTCTTGCTACCAAGCTGCTCT
GCTGTGTTGCTACTTTTTGTAGCTATATAGTATGGAACTCCCTGATAACTTGCTCTTGAACTACTAAATGTTATGTAAACAAAACTGGATGATCT
GTTAGAATCAGTCTCGAGCTTCTAAGCAAAACTTGCCTCAGGTTACAAGAACACCATATCAAGAATTGCCAAATTACTGTGGTATTATTGCATAC
ACTAGTGGAAGCATTCTCTTTAGTTCCTAACTAGCATAAATCCTTCGTATGCTAGACCATTTGGAACACTGTGCTATGAAGAGACGTTCACCAAG
CTTTATGGTTTAGAACTGTATATATTAACTTGTGCTTTTCATCCATAAAACTTGAGATTTGACACTATAGGCAAAAAGTTCTATTGTTTGTTCCT
AGACTGCATACATCCTCTTGTAGCTTTCACCATAAAGCTCTGTATCTGATGCCACAGATATAGCATATGAATGTGAATGAGTTCCTGCCCTTCTT
ATACTCCTCATCTTCGACTCTTCTAGCCTATGTCCAAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394615] SGN-U586263 Tomato 200607 Build 2 5 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195941 [Download][View] Facility Assigned ID: FA0AAD30AB02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.947 Expected Error Rate: 0.0083 Quality Trim Threshold: 14.5