EST details — SGN-E395402
Search information |
Request: 395402 | Match: SGN-E395402 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C173534 | Clone name: TUS-16-G4 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C173534 is on microarray TOM1 spot ID 1-1-5.3.18.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C3334 [cLEC-20-E1] | Trace: SGN-T27564 | EST: SGN-E205782 | Direction: 5' | Facility: TIGR |
Clone: SGN-C173534 [TUS-16-G4] | Trace: SGN-T196729 | EST: SGN-E395403 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E395402 | Length: 714 bp (889 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E395402 [] (trimmed)
GGAGAAGTGATAATTATATTACAATCAATATTGTCATGATTTACATTTTATCGCAAACAAAATCAGAACAAAGATTAGAGACATCTCAAAGTAGA
GAACAGTTGCTTCATCCCCTTTTTTGGCACTTCCGCCAGATTTTGTACAACAGGTGTTTCAACATCAAGAAAGCCAGCAACAAACTACACTGCAA
CTTCTCCCTGTAGCATTTGCATTGTTTTGAGTATGAATAAAAGAGAACCTCTTCTAAATTACTCTGATATTTCATCATCGGGTTGTATTACAGTT
AGCAAGGAATATTTGACCCTCACAGAGATCCTTCCTTTCTCAACCATAAGCCTTGCACCTGAAACAACCCAATAACCAGGAGGTTCCTGTGGTCC
TCGAGTCATCTCAGTAGTATCGACAAATTTCAAGAGCTTAGGGGCTTGCACAGGAACTGGAGGACCACCAGGGTAAATGGCAGAATTTATGTTCA
CATCATCTGGCCGAGGAGGTGGCTTCTGAACTGATGTAAAGTGCTGGCTAATGAGAGTTGATATCAGGCCAGATTTGCGAGCCAACCCAGGGGAA
CCATCCCACTCAGCGTGCTTTACCATAGTAGCTCCCATGACAGTCGAGAAACGGAGTCTCAGAAAGAGGACCTTTTTTAACCCATAATCCCCTAA
TTCCAATTGTGCTCCAGTAACTATGTTAAGGTCTTCCTCAGATTCAACA
GAACAGTTGCTTCATCCCCTTTTTTGGCACTTCCGCCAGATTTTGTACAACAGGTGTTTCAACATCAAGAAAGCCAGCAACAAACTACACTGCAA
CTTCTCCCTGTAGCATTTGCATTGTTTTGAGTATGAATAAAAGAGAACCTCTTCTAAATTACTCTGATATTTCATCATCGGGTTGTATTACAGTT
AGCAAGGAATATTTGACCCTCACAGAGATCCTTCCTTTCTCAACCATAAGCCTTGCACCTGAAACAACCCAATAACCAGGAGGTTCCTGTGGTCC
TCGAGTCATCTCAGTAGTATCGACAAATTTCAAGAGCTTAGGGGCTTGCACAGGAACTGGAGGACCACCAGGGTAAATGGCAGAATTTATGTTCA
CATCATCTGGCCGAGGAGGTGGCTTCTGAACTGATGTAAAGTGCTGGCTAATGAGAGTTGATATCAGGCCAGATTTGCGAGCCAACCCAGGGGAA
CCATCCCACTCAGCGTGCTTTACCATAGTAGCTCCCATGACAGTCGAGAAACGGAGTCTCAGAAAGAGGACCTTTTTTAACCCATAATCCCCTAA
TTCCAATTGTGCTCCAGTAACTATGTTAAGGTCTTCCTCAGATTCAACA
Unigenes |
Current Unigene builds | |||||
[SGN-E395402] | SGN-U585158 | Tomato 200607 | Build 2 | 11 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T196728 [Download][View] | Facility Assigned ID: FA0AAD4BD02FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.975 | Expected Error Rate: 0.0041 | Quality Trim Threshold: 14.5 |