EST details — SGN-E395442

Search information 
Request: 395442Match: SGN-E395442
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173646Clone name: TUS-16-K20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173646 is on microarray TOM1 spot ID 1-1-5.3.18.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C4083 [cLEC-23-H9] Trace: SGN-T28317 EST: SGN-E206358 Direction: 5' Facility: TIGR
Clone: SGN-C173646 [TUS-16-K20] Trace: SGN-T196769 EST: SGN-E395443 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E395442Length: 685 bp (890 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E395442 [] (trimmed) ATCGAGAAAAAAAATTAACTTTACTATTTTTTAAAAATAATTTTATCTTTAGTACGATTCGACTTCACTGCAACTTTTAGGGGATAGTCGTGTAT
TTTCCTCTAAAATAAATTCATGGAAATTCCTCTCAACCCAAAAATATAGTGTCTAAAGCAATCCACATATTAATATTTGCTTCACGTCAATACAG
CTAACAAATAGAAAACAGGGGAACTCCAAATTACAACAACAAGACAGACATATATCAGATTCTACCTATGATTCATCATCCCTCGCGTCGACCTT
CATGGAATCAAGATACGATTTTCCATCAAGTTTTCGTGCAAAAAAGTCCTGTAAATATTTTTGCACAGGAACTCTTCGGAAAATGGGAGGATTAT
GTGGTCCAATAAGGCTGTGTGCAGGTCCTAACTCGGACTCAAGGTTGATGTTGTAGAATGTTGCAACAGAGAGACGTTCTTCATATGAGTTTACA
ATTGCTCTATGCTCAATGCTCCTATAGACACCATTGCTCACTATCTCCATCATATCGCCAATATTGACAATCAAAGCATTTGGGAGGGGCGTTAT
AGGCACCCAAATATCGTCTTTTCGGACTTGGAGACCTTCAGTTTCATTGAGCTGGAAGAGGATGGTGAGGGCATCTGCATCAGAATGAGGGCTTA
AGCCAATTGCCCTGTCTGGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395442] SGN-U565164 Tomato 200607 Build 2 11 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196768 [Download][View] Facility Assigned ID: FA0AAD4BF10FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.966 Expected Error Rate: 0.0032 Quality Trim Threshold: 14.5