Notice: Due to a regional power outage, SGN was briefly unavailable on Saturday, Feb 4. We apologize for the inconvenience.

EST details — SGN-E395525

Search information 
Request: 395525Match: SGN-E395525
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183822Clone name: TUS-43-C20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183822 is on microarray TOM1 spot ID 1-1-5.3.18.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C1910 [cLEC-14-E15] Trace: SGN-T26214 EST: SGN-E204598 Direction: 5' Facility: TIGR
Clone: SGN-C183822 [TUS-43-C20] Trace: SGN-T199790 EST: SGN-E398464 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395525Length: 642 bp (896 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E395525 [] (trimmed) ATCTAAGTTAACTTTTTTTGCCCTTTATTGATAGTTCCATTGTGCCTTCTTTAGCAAAATTATGTGTACAAAATAACAGCTGCTTCAGAGTTAGC
AGAGGGGGAAAACAAAAGAAACTTATATTTACTGCGGAATTTTCTTATCCAACACCAGTTATATGAACATTACAATAGACTTATATTTATAGTTG
CATCTCATTTGCTGTCTTCTACTCTGTTACTCTCAGTTGTTGAGGTAATTCTTGCTTCTCCGACGATAAAGAATGGGCTTGCTAACTGGTATGAT
TTCCATCTTTCACAATTAGATTAGTCAGTAGTTCTTCACTTTGCTGGACTCCCAGTTCATCTGATAATTTATTACACAACTGTCTATATACTGCA
GAATCCCCGGAAGATTTCTGTAACTCTACAACATACAAGGATGTACTAATCTCGAAAACCTCTACTACTATTGAAAGACTTGCTTGTGTTTTTTG
ACCTTTGTTCTCTAGCAATACTTTTAACTTTCCAGGTTTTTTCTGGACTTGAAATCCCATTTGAAACAGCTAGATTCTCAATCCTATCTAGCAAT
TCTTTTTGGAAAAAGATTAAATGTGAACCTGATCTTCCTCTCAAAAACATCCTCCATTTTCCAAAAAATCCA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395525] SGN-U567122 Tomato 200607 Build 2 9 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196851 [Download][View] Facility Assigned ID: FA0AAD31BB10FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.938 Expected Error Rate: 0.0087 Quality Trim Threshold: 14.5