EST details — SGN-E395582

Search information 
Request: 395582Match: SGN-E395582
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173512Clone name: TUS-16-F6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173512 is on microarray TOM1 spot ID 1-1-3.2.18.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C3278 [cLEC-20-B14] Trace: SGN-T27830 EST: SGN-E206048 Direction: 5' Facility: TIGR
Clone: SGN-C173512 [TUS-16-F6] Trace: SGN-T196909 EST: SGN-E395583 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E395582Length: 697 bp (862 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E395582 [] (trimmed) GACGGAACGAAGGGCTAAATAAAAATAGTGGTTACACCATTCAAATGGTAAAAATGTTTGTATTTCGAATAATATTTCACTGATTTATTAGGATG
TTACACTTGAGTGCATCTTTCCTCAAGTTACAACAAATAGGAATAACATGTATCCCTCAGTTTAAAGAAGCATAAAGTTACTCAAAAGTCATGTT
CATCACCTCTTCTCTAATAGAATCAAACAGCACAGTGGAAAGATAACGCTCCCCGAAACTAGGGAAGATGACCGCGATAAGTTTCCCAGCATTTT
CGGGCTTTTTTGCTACTTGTACTGCTGCAGCAGCTGCAGCACCTGATGATATTCCTACCAGTAGGCCTTCTTTCAATGCAAGAACCTTTGTCATT
TCAATAGCTTCATTACTAGATACTTGAAGAACTCCATCCAGGATGCTTTGATCGAGGACGGCTGGGATGAAACTAGCACCAATTCCTTGGATTTT
ATGTGGCCCTAGTTGTCCTCCGTTTAGAATCGCATTTTCAGCTGGTTCTACACCATATACCTTTATTTCTGGATTCTTCTCCTTAAGGAACCTTC
CTGCTCCCGTCACCGTGCCTCCAGTCCCAATCCCTGCAATGAAAATATCAACTTTTCCTCCTGTGCTCTTCCATATTTCTGGTCCAGTTGTTTCA
TAGTGAATCTTTGGATTGGCAGGATTCTCAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395582] SGN-U579281 Tomato 200607 Build 2 17 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196908 [Download][View] Facility Assigned ID: FA0AAD4DC03FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.972 Expected Error Rate: 0.0035 Quality Trim Threshold: 14.5