EST details — SGN-E395782

Search information 
Request: 395782Match: SGN-E395782
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174004Clone name: TUS-17-J18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174004 is on microarray TOM1 spot ID 1-1-7.2.17.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C174004 [TUS-17-J18] Trace: SGN-T197109 EST: SGN-E395783 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E395782Length: 618 bp (869 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E395782 [] (trimmed) GAGCAACAACCAAAAAAAAAACATTTTAATCAAACAAGGTTGTTATGTACTAATGTACAAACAATTGCAGAAATTATTCCAGCTTAAGAACTGAA
AAAAGAAATATTTATGTCTTCACTCCTCAAACATCCATCATGAAAAGAAAAATCAAGAGAACAAAAAAAAAAAAGAAACAGAAGAAAAAGAAAAC
AAGTTCAGGCATGGAAGTTGCAATTAGCTCAAGATGCGGTTCGCCATTGCAGCTCGACTTGAAGGCGACCGTTCTTTGAATCAATGAGGGGGTAC
TTCTCATTGATCCTTTTGTTGCTAACAACATCGGAAAGATTTATATCAACATAACCCAATGTCTCCTTAGGATGCAATAGGCCAATCCTTGTAGA
GGTGCTGACAACTTCCATATGCACCCTATCATTCACAGGAGGCTCCTCCAACACAAAAGTAAACTCCTCTTCCCATCTTGGATCCCTGTTCTTCT
TGACTTGCTTAGTTTTTCTCTCCTCTCCTTTGAAAAGAATCTTGACATATGGATTAGTATGGTGCTTTCCTTCAACATCTTGAGCTTCGTGGACA
ATAATCATAAGGACGCCTCCCCCTGGTGGTGTTCCTTCTGGAACCTTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395782] SGN-U574255 Tomato 200607 Build 2 32 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197108 [Download][View] Facility Assigned ID: FA0AAD5DE09FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.944 Expected Error Rate: 0.0082 Quality Trim Threshold: 14.5