EST details — SGN-E395800

Search information 
Request: 395800Match: SGN-E395800
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174357Clone name: TUS-18-I11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174357 is on microarray TOM1 spot ID 1-1-6.1.16.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C22945 [cLED-4-B12] Trace: SGN-T49330 EST: SGN-E231561 Direction: 5' Facility: TIGR
Clone: SGN-C174357 [TUS-18-I11] Trace: SGN-T199846 EST: SGN-E398520 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395800Length: 621 bp (867 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395800 [] (trimmed) CATTTTTTAACAGATAACGAGATAAAAAACTATTGGAACACACATATAAGACGAAAGCTCTTGAGTCGAGGTATTGATCCAACAACACATAGATC
AATCAATGATCCTACTACAATACCAAAAGTTACAACGATTACTTTTGCTGCTGCTCATGAAAATATTAAAGATATTGATCAACAAGATGAGATGA
TAAATATCAAAGCTGAATTCGTTGAAACAAGCAAAGAATCAGATAATAATGAAATAATTCAAGAAAAGTCATCATCATGTCTTCCTGACTTAAAT
CTTGAACTCAGAATTAGTCCTCCACATCATCAACAACTCGATCATCATCGTCATCATCAACGATCAAGCTCTTTATGTTTTACATGTAGTTTGGG
AATTCAAAATAGTAAAGATTGCAGTTGTGGAAGTGAAAGTAATGGAAATGGATGGAGTAATAATATGGTAAGTATGAACATTATGGCTGGTTATG
ACTTTTTGGGCTTGAAGACTAATGGTCTTTTGGACTATAGAACTTTGGAAACTAAGTGATTCAATTCGATTCGAATTTATGCATAAATCATCTTA
ATTTTGATGTATATGTACAAAAAAAAAAGAGTTTGAGGAAATTATTTTCTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395800] SGN-U563435 Tomato 200607 Build 2 26 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197126 [Download][View] Facility Assigned ID: FA0AAD6AE06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.929 Expected Error Rate: 0.0220 Quality Trim Threshold: 12.5