EST details — SGN-E396248

Search information 
Request: 396248Match: SGN-E396248
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182454Clone name: TUS-39-J20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182454 is on microarray TOM1 spot ID 1-1-5.2.7.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C70952 [cLER-16-G7] Trace: SGN-T95627 EST: SGN-E284354 Direction: 5' Facility: TIGR
Clone: SGN-C182454 [TUS-39-J20] Trace: SGN-T191547 EST: SGN-E390221 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E396248Length: 575 bp (886 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396248 [] (trimmed) AGAAACCCAAAAATATATTTTATTACTTGGAACGGATTTACAAAGACCAAAAAAACCAAAACTCTTCCTCTACAAAAAGTCCCCTAAGCTCCCTG
AACGAACAAAACAAAAAAACTTAAAATGAAACTTTTTTTCCACCCCCCAATATCGTTTATTTTGTCCCCCAAAAATTTACATAAACCCAAAAGCC
CTAAAATCTATCTAACATTTCAATAAAAATTTGACGGGGAAAACAATTTTATTAAATCTGGGATCCCCCTGGTCTTCCCATAAGGGAACAATTCG
ATTGGCCCTAAAAATCTGTAACTTGGAAAACGGGGGATTGAAAAGGGGGAAAAACATAAAAAAAAGAATCGGGGTGCGAATGGACCACCGCAGCT
GGACCTGCAACCGGAACTGGAGCTGGAACTGCGGGTTTTTTAACCCCACCAGCCGGGCCAACGCTAACCAAGTCCGCCGGGCCCAAATTCTTCCT
CAATAAGCTCGTTAAAACCCCAGCGTCTACTTCCCCCCCAACTTCGAGGTGATTCTTTCCCGCCCCTGGAAAAACTGGGGATTCTACGCCCGATA
GAAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396248] SGN-U584434 Tomato 200607 Build 2 2 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197574 [Download][View] Facility Assigned ID: FA0AAD27DE10FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.906 Expected Error Rate: 0.0233 Quality Trim Threshold: 14.5