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EST details — SGN-E396673

Search information 
Request: 396673Match: SGN-E396673
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183837Clone name: TUS-43-D11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183837 is on microarray TOM1 spot ID 1-1-6.4.19.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C4204 [cLEC-23-P16] Trace: SGN-T28366 EST: SGN-E206407 Direction: 5' Facility: TIGR
Clone: SGN-C183837 [TUS-43-D11] Trace: SGN-T197998 EST: SGN-E396672 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396673Length: 631 bp (884 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396673 [] (trimmed) AAGCCTTGATTTAGGATTGGATTGCAAGTTCGAAACAACGCCAACTGAATGTTCACCAGTGAATTATAGTCCGGAGAATAGCTTAGATGATATTC
AAGCTAATAAGGATGAAAATGAAGAGACGTCGAATAAAAATCTCAAGACGATGAGAAATAATGGAGATGGAGATGATGTTTCGCAACAAAACCCT
ACTAAAAGAGCTAGGGTTTCTGTTAGAGTCAGATGTGATGCCCCTACGATGAATGATGGATGCCAATGGAGAAAATATGGTCAAAAAATAGCAAA
AGGAAATCCATGCCCTATAGCTTACTATCGTTGCACCGTAGCACCAAATTGCCCAGTTAGAAAGCAGGTTCAAAGATGTGCCGAAGACATGTCAA
TATTGATCACCACATATGAAGGAACACACAACCATACCCTTCCTCTTTCAGCCACCGCAATGGCTTCTACCACCTCAGCGGCCGCTAGCATGCTG
TTATCCGGTTCATCTAATTCATCAGACCCAAACCCACAAGTAACTGCCACCACCACCACTACCCCTACTACCACTACTTCTGCCAATATCAACGG
ACTCAACTTCTATCTCTCTGATACCTCAAAACATCATAAATCCCCATATTACTTTTCCTAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396673] SGN-U571280 Tomato 200607 Build 2 8 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197999 [Download][View] Facility Assigned ID: FA0AAD31CB06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.977 Expected Error Rate: 0.0027 Quality Trim Threshold: 14.5