Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-E396788

Search information 
Request: 396788Match: SGN-E396788
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183976Clone name: TUS-43-J6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183976 is on microarray TOM1 spot ID 1-1-3.2.19.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C17616 [cLED-1-H8] Trace: SGN-T48532 EST: SGN-E227020 Direction: 5' Facility: TIGR
Clone: SGN-C17616 [cLED-1-H8] Trace: SGN-T48533 EST: SGN-E227021 Direction: 3' Facility: TIGR
Clone: SGN-C183976 [TUS-43-J6] Trace: SGN-T197964 EST: SGN-E396638 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396788Length: 747 bp (896 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396788 [] (trimmed) GCAAGGATAAAGAACAAGGAGTGCCCTTCTTTCATTATTGTCCTTTCCCTGTACAAACTTTCTATCCGAAAAGAGTAAAGATAAAACTAGAAACA
AGCTAGTGCAAAGCTGTAGCGTTTATCCAATACAATGTAACCTGACATGCTACTTTCCTGATTGGGAGAAGTTCTCTGTGTTCTTGCCCCCCTCG
CAACCCAACCAACCGATTGGGATCACAGAAGAGGAACTTTGCCAGCAAGTTCGTCATGGTTGACTCTCCTACTTGATGTATTGCGACATCCACTT
GAAACCCTCACCATATCCCATCTTGCGCACAATGCTGCACATAAACACCTCAATTGGACGGACATTGGTACCAGCAAGGTTGATGTTACCCTTGC
CAGTGGTCACACCAGTTAGGCCCAAGTGATAACGCAGCTCATCTTCTGAGGCAGCATATGGTATATCAATCTTGTTTCCCAAAATGAGAAATGGG
ACATTTGTTAACGACTCATCTGACAGAAGCCCATCCAATTCCTTCTTTGCCTCTGGAAACCTCTCTCTGTCATTTGCGTCCACAAGATAAACAAC
AGCGTCCACCTTGGCATAATAGTCTCTCCAGACTCTTCTAGCAATCTGGTGTCCCCCTAAATCAAAAGCCTTGAACTTGATATTCCCAATACTCA
ACTCCTCTGATGTGGGGGTATGTGTAGGTTGATGCTGCACCATTCTCTCCTCTTTCAACATATGAAGCAAGGTAGTTTTTGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396788] SGN-U581221 Tomato 200607 Build 2 8 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198114 [Download][View] Facility Assigned ID: FA0AAD31DE03FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.969 Expected Error Rate: 0.0140 Quality Trim Threshold: 14.5