EST details — SGN-E396873

Search information 
Request: 396873Match: SGN-E396873
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184396Clone name: TUS-44-K18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184396 is on microarray TOM1 spot ID 1-1-7.3.16.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C21255 [cLED-32-G8] Trace: SGN-T57109 EST: SGN-E240103 Direction: 5' Facility: TIGR
Clone: SGN-C184396 [TUS-44-K18] Trace: SGN-T199963 EST: SGN-E398637 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E396873Length: 618 bp (879 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396873 [] (trimmed) GTACATGTTATCCTCTGTTGGAACCAGAATAAATTTAGAGGTTCTACAATGCTTTCTTGCATCTGCTCATACACAGTCACAATAAAAAAACTAAC
TGGAGTAAGAACCAAATGTGCGACATTTTCATCATCTGTTCCACGACAAATTAAGGTCCTCTCTATAAAAGTAGGAAACATCTTCTCACATCATA
AACTTATTTTTCTTCTCTGCTGGCTTAAGAATTTGGAAAGAGCACATCAAGTTTTCATCAACACCCATCATAGCACCAGCATTGTCAAACTCGCC
GCAGTAATTGGGAGCTGAAAAAATGGTGACAAGCTGCCTGTCAGCAAAGAATTCATAACCATCCTCCACGACCTGATGGGCACGACAGACAAGGT
CCAAGTCATGCTTTGACAAAAACTCAGAAACTTTATCAGGACCAAAGGTGTATGAAACTCCCCTATCATTCATCCCCCAACCCTTTACATCTTTA
CCAGGATCTGACCAAAGTAAATCGCAAAGCAAACCAGTGTCCGGGATGGCAGTTGGACGTGGTAAGTTCCGAATCTGATCCCAACTAAAAAGATC
AGGGGACAGACCCCCATGCATGCATAATATCTTCCCCTCGATTACTGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396873] SGN-U577582 Tomato 200607 Build 2 5 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198199 [Download][View] Facility Assigned ID: FA0AAD32BF09FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.972 Expected Error Rate: 0.0037 Quality Trim Threshold: 14.5