EST details — SGN-E397893

Search information 
Request: 397893Match: SGN-E397893
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C181180Clone name: TUS-36-E18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C181180 is on microarray TOM1 spot ID 1-1-7.1.14.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C24858 [cLED-9-N7] Trace: SGN-T51001 EST: SGN-E233440 Direction: 5' Facility: TIGR
Clone: SGN-C181180 [TUS-36-E18] Trace: SGN-T199179 EST: SGN-E397853 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E397893Length: 645 bp (856 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397893 [] (trimmed) AAATAGATGTATTTTTTAAAATCAAAGTGACAGCTTGTGGAGTACTCTGTGTCATTTTTTTGAGGAAAAAGTACAGTGTCATCTTGCAACTTGCA
TCATATCTTGGTGTTCCGTCATAATTCATTAGTGCAAGCTGTCTTCTTGAGTACTAAGTTCAGAATTTGACTTTGTTGTATGATTTTCATGTGAA
AAGATGTATCAGAGATATACGGATTTCACTTAGTTAATAGAGTAAAGGCAAAGGGTTGTTATTCTGTAAGGTATTCACTAAATCTCAGTTACTGC
AGTATAAATAGATGATGGAGGAAACACTGCTAGCTACATAATTGATCCCCTCCCTATTCTCATTTCTTGTTCAATGTATTACCAATGTCTAGCAC
AAAACGATATTTCACGTCCGATTTCAAAAGACGTTCCAACGCGGTGTTAACGTACTCCATTGGCACCACTTCAATATCTGGTGTTATGTTATGCT
TTGCCGCAAAGTCCAACATTTCTTGAGTCTCTTTCATCCCTCCTATGCAACTTCCAGCCACTAGCTTCCTTCCCATAAGTAGAGGAAACACGGGC
AACTCCCCCGGTTTTTCTGGTGCACCAACCATAACAAACTTACCATGAGATTTTATCAACATAAGTAATGGAACC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397893] SGN-U572059 Tomato 200607 Build 2 13 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199219 [Download][View] Facility Assigned ID: FA0AAD24BC09FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.965 Expected Error Rate: 0.0075 Quality Trim Threshold: 12.5