EST details — SGN-E397893
Search information |
Request: 397893 | Match: SGN-E397893 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C181180 | Clone name: TUS-36-E18 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C181180 is on microarray TOM1 spot ID 1-1-7.1.14.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C24858 [cLED-9-N7] | Trace: SGN-T51001 | EST: SGN-E233440 | Direction: 5' | Facility: TIGR |
Clone: SGN-C181180 [TUS-36-E18] | Trace: SGN-T199179 | EST: SGN-E397853 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E397893 | Length: 645 bp (856 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E397893 [] (trimmed)
AAATAGATGTATTTTTTAAAATCAAAGTGACAGCTTGTGGAGTACTCTGTGTCATTTTTTTGAGGAAAAAGTACAGTGTCATCTTGCAACTTGCA
TCATATCTTGGTGTTCCGTCATAATTCATTAGTGCAAGCTGTCTTCTTGAGTACTAAGTTCAGAATTTGACTTTGTTGTATGATTTTCATGTGAA
AAGATGTATCAGAGATATACGGATTTCACTTAGTTAATAGAGTAAAGGCAAAGGGTTGTTATTCTGTAAGGTATTCACTAAATCTCAGTTACTGC
AGTATAAATAGATGATGGAGGAAACACTGCTAGCTACATAATTGATCCCCTCCCTATTCTCATTTCTTGTTCAATGTATTACCAATGTCTAGCAC
AAAACGATATTTCACGTCCGATTTCAAAAGACGTTCCAACGCGGTGTTAACGTACTCCATTGGCACCACTTCAATATCTGGTGTTATGTTATGCT
TTGCCGCAAAGTCCAACATTTCTTGAGTCTCTTTCATCCCTCCTATGCAACTTCCAGCCACTAGCTTCCTTCCCATAAGTAGAGGAAACACGGGC
AACTCCCCCGGTTTTTCTGGTGCACCAACCATAACAAACTTACCATGAGATTTTATCAACATAAGTAATGGAACC
TCATATCTTGGTGTTCCGTCATAATTCATTAGTGCAAGCTGTCTTCTTGAGTACTAAGTTCAGAATTTGACTTTGTTGTATGATTTTCATGTGAA
AAGATGTATCAGAGATATACGGATTTCACTTAGTTAATAGAGTAAAGGCAAAGGGTTGTTATTCTGTAAGGTATTCACTAAATCTCAGTTACTGC
AGTATAAATAGATGATGGAGGAAACACTGCTAGCTACATAATTGATCCCCTCCCTATTCTCATTTCTTGTTCAATGTATTACCAATGTCTAGCAC
AAAACGATATTTCACGTCCGATTTCAAAAGACGTTCCAACGCGGTGTTAACGTACTCCATTGGCACCACTTCAATATCTGGTGTTATGTTATGCT
TTGCCGCAAAGTCCAACATTTCTTGAGTCTCTTTCATCCCTCCTATGCAACTTCCAGCCACTAGCTTCCTTCCCATAAGTAGAGGAAACACGGGC
AACTCCCCCGGTTTTTCTGGTGCACCAACCATAACAAACTTACCATGAGATTTTATCAACATAAGTAATGGAACC
Unigenes |
Current Unigene builds | |||||
[SGN-E397893] | SGN-U572059 | Tomato 200607 | Build 2 | 13 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T199219 [Download][View] | Facility Assigned ID: FA0AAD24BC09FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.965 | Expected Error Rate: 0.0075 | Quality Trim Threshold: 12.5 |