EST details — SGN-E398206
| Search information |
| Request: 398206 | Match: SGN-E398206 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172878 | Clone name: TUS-14-K20 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172878 is on microarray TOM1 spot ID 1-1-5.3.20.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14201 [cLEC-7-C9] | Trace: SGN-T25369 | EST: SGN-E202087 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172878 [TUS-14-K20] | Trace: SGN-T195399 | EST: SGN-E394073 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172878 [TUS-14-K20] | Trace: SGN-T195399 | EST: SGN-E399085 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172878 [TUS-14-K20] | Trace: SGN-T195694 | EST: SGN-E394368 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172878 [TUS-14-K20] | Trace: SGN-T200219 | EST: SGN-E399086 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398206 | Length: 648 bp (850 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E398206 [] (trimmed)
AATTCAACTTTTGAAGTAGAGGCTACCCACTTATAATATAATATGATATGATATATATATGATTACACATGAACAAGAAAAATGGACTATGTTAC
ACTGAGAACTAACATCATATTCAAAGTTATGTAGCTACTATCATCATATATCTATATGTTTACATTAATATAATATGTATAAACTGACAAAACTG
GCATATTCTGCATAGATCACAACACCTTCACCACTTACAGCTCCTCCCCAAAAGAAAAAGAAGAAAACAATCTTGGCTGTTTTCTCCTTGACTTT
CTCCTTTGACGTACGATTACCTTGCATGGAGAAGCACTCGAAGCACACTCTTCATCTTTGGCCGGCCTTCTGGTGATACACTGACACAAGCTAGA
GCCAATTTGAGGACTGCTAACATCTGGCTCCTAACGTTGAGCGATGCCTTAGAAATGCTAGAATCCAGAATGTGATCCCACTTGCTGTGCTTCTC
AGAGTTGCTCAGCACTGACTTGGCTAACTCGGTTCCCTGACTAACTGCAGGCCTTCCTGTCAACAATTCCAGCAAAACGACCCCAAAGCTATATA
CATTTCCAGCCATTGTGACTCTCATTGTGTATGCATATTCTGGAGGAATATAACCGACAGACCCAGCAACACCAAAAA
ACTGAGAACTAACATCATATTCAAAGTTATGTAGCTACTATCATCATATATCTATATGTTTACATTAATATAATATGTATAAACTGACAAAACTG
GCATATTCTGCATAGATCACAACACCTTCACCACTTACAGCTCCTCCCCAAAAGAAAAAGAAGAAAACAATCTTGGCTGTTTTCTCCTTGACTTT
CTCCTTTGACGTACGATTACCTTGCATGGAGAAGCACTCGAAGCACACTCTTCATCTTTGGCCGGCCTTCTGGTGATACACTGACACAAGCTAGA
GCCAATTTGAGGACTGCTAACATCTGGCTCCTAACGTTGAGCGATGCCTTAGAAATGCTAGAATCCAGAATGTGATCCCACTTGCTGTGCTTCTC
AGAGTTGCTCAGCACTGACTTGGCTAACTCGGTTCCCTGACTAACTGCAGGCCTTCCTGTCAACAATTCCAGCAAAACGACCCCAAAGCTATATA
CATTTCCAGCCATTGTGACTCTCATTGTGTATGCATATTCTGGAGGAATATAACCGACAGACCCAGCAACACCAAAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398206] | SGN-U573289 | Tomato 200607 | Build 2 | 18 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T199532 [Download][View] | Facility Assigned ID: FA0AAD2BF10FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0018 | Quality Trim Threshold: 14.5 |
Working
