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EST details — SGN-E398481

Search information 
Request: 398481Match: SGN-E398481
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173660Clone name: TUS-16-L10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173660 is on microarray TOM1 spot ID 1-1-7.4.18.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C4121 [cLEC-23-J5] Trace: SGN-T28321 EST: SGN-E206362 Direction: 5' Facility: TIGR
Clone: SGN-C173660 [TUS-16-L10] Trace: SGN-T196955 EST: SGN-E395629 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398481Length: 653 bp (849 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398481 [] (trimmed) CGAATATTCGATGCTTTCAATCGGAAGGAAGGCATCGATCCAGAGATTACTTTACAAACTATCAACAGAGGGTTGCCGGAAATCTAGTACCCATG
GCTTGTTACGCGGCGATTGAAAAGGGCGGCGACGTGTTTTTCCCAACTCCGGCACGTTCAGTTCGTCGGTCTTTTCACTTGCTCATGTTCGTGCT
TATATTTACTTTGTTGCTAAATAGCAACTGCGTTTCTTCATACTCATCAGGATACTGGGATTTTAGCAGCAGCAACTCCACTGTGATGGAAAGAG
GGAAGTTGGGTCCCGGAAATCCCGGTGTATGTTCCAGAAAGGCCAAACATCTTCCAGTTTGTGAATGTGGATTCAAAATGTTGGACTCTTGCTTC
TTGAATAAGAACAAGATGCTTGAAATAGAAAAGGGAGCAAATGACTTTAACATACCCATAATCAGATCCAACCGAAAATTAGTTGCCTCTACTGA
TGGAGGTCTGCATAAACCGTCTTGTTTAGTCTTCAATTCTGCATGGAAGGCCCGACAAGTAGAACACGAACCAAACAAAAAGCTCAATTATCCAT
CACCTGCTGGTATACAAAGACCAAAAAAGTGATGAGGATATCGCATTCCTGAGTATTCTTGAACCTTGGCCCGCTTCTCAGGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398481] SGN-U581387 Tomato 200607 Build 2 23 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199807 [Download][View] Facility Assigned ID: FA0AAD4DF05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.977 Expected Error Rate: 0.0038 Quality Trim Threshold: 14.5