EST details — SGN-E398623
| Search information |
| Request: 398623 | Match: SGN-E398623 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183974 | Clone name: TUS-43-J4 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183974 is on microarray TOM1 spot ID 1-1-5.2.19.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C17607 [cLED-1-H2] | Trace: SGN-T48527 | EST: SGN-E227015 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C17607 [cLED-1-H2] | Trace: SGN-T48528 | EST: SGN-E227016 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C183974 [TUS-43-J4] | Trace: SGN-T199924 | EST: SGN-E398598 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398623 | Length: 203 bp (905 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E398623 [] (trimmed)
CAGAAATAATATAAGATCAAGTAAATGTTTCTATTCAATTTGGTAGTTGATTTAATGTTTGACAGGAATCTGAGGAGGAAAACTTATAACAGTGA
AACAATTGAGCATATAGAACAGTAAGTATTCACTAAATGGAGTAACAAAGAAATATCAATGTGTAACAGAAGAAGACCCTATTTCACTCATTGGT
GGTGTGAGGTCTG
AACAATTGAGCATATAGAACAGTAAGTATTCACTAAATGGAGTAACAAAGAAATATCAATGTGTAACAGAAGAAGACCCTATTTCACTCATTGGT
GGTGTGAGGTCTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398623] | SGN-U582034 | Tomato 200607 | Build 2 | 5 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T199949 [Download][View] | Facility Assigned ID: FA0AAD31DE02FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.903 | Expected Error Rate: 0.0076 | Quality Trim Threshold: 14.5 |
Working
