EST details — SGN-E398660

Search information 
Request: 398660Match: SGN-E398660
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184507Clone name: TUS-44-P9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184507 is on microarray TOM1 spot ID 1-1-8.4.16.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C184507 [TUS-44-P9] Trace: SGN-T198340 EST: SGN-E397014 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E398660Length: 495 bp (890 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E398660 [] (trimmed) TTTTCGGGTAAACTCGATAGAAATTCGAATTAATCATCCTTTGAATAAAAAGATGGAAAACCAGGGAAAATGAATACAATTTCTCAAGGGAAAAC
CCAAAGGAGAATTCAATTTAACTGTCCCTATAACCATAGGGCAATTAGTTTTTCTAGAACTTAGTATCCTTCGGGCTTGTAAGCGATGAAACTGA
TGCACTGCACTTGACGAACATTGTCGAATCCAATGATACGGACCCATGCCTGTGGGTAAGCCTTCTTTGCCTCCTGCACCTCACCCAAAACCTGG
GTTGCATCAGTGCACCCGAACATGGGCAACTTCCACATGGTCCAGTATCTGCCATCGTAGTATCCTGGTGACTTATGGTTCTCACGGTACACAAA
TCCGTGCTCATTCTCGAATTCCAAGCAAGGAACCCATCCATTTTTCAATAGGTACTCAATTTCGCTGAGCAATTGCTCGTCGGACAAATCAGGAA
GGTACAACAGAGTCTCGTAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398660] SGN-U580869 Tomato 200607 Build 2 1124 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199986 [Download][View] Facility Assigned ID: FA0AAD32CH05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.970 Expected Error Rate: 0.0166 Quality Trim Threshold: 14.5