EST details — SGN-E399101
| Search information |
| Request: 399101 | Match: SGN-E399101 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172960 | Clone name: TUS-14-O6 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172960 is on microarray TOM1 spot ID 1-1-3.3.20.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14372 [cLEC-7-L16] | Trace: SGN-T25351 | EST: SGN-E202069 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172960 [TUS-14-O6] | Trace: SGN-T195409 | EST: SGN-E394083 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172960 [TUS-14-O6] | Trace: SGN-T195409 | EST: SGN-E399100 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172960 [TUS-14-O6] | Trace: SGN-T195702 | EST: SGN-E394376 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172960 [TUS-14-O6] | Trace: SGN-T199533 | EST: SGN-E398207 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172960 [TUS-14-O6] | Trace: SGN-T199557 | EST: SGN-E398231 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399101 | Length: 555 bp (862 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399101 [] (trimmed)
TTATTCTTTTAGTAACTCTTCCTATTGTACTCAATTTCCTAGCAAAAAAGGATAGGAAAAATGTTATGCCACCTGGTCCTTTAGGGTTACCATTT
ATTGGAAATTTGCATCAATACGATGGTTTAACCCCTCATATTTATTTTTCGAAACTTGCCAAGAAATATGGAAAAATATTTTCATTAAAACTTGG
TTCTACTCCAATAGTTGTAATTTCTTCAGCAAAATTAGCAAAAGAAGTGTTAAAAATACAAGATTTAACATTTTGTAGTAGACCTTCTTTTCTTG
GTCAACAAAAATTGTCTTACAATGGTCGTGATATTGGCTTTGCACCTTATAATGACTATTGGAGAGAAATGCGAAAAATTTGCGTTGTTCATTTG
TTCAGTTTAAAAAAAGTACAATCCTTTAGTCCGGTTCGTGAAGATGAAGTATCAAGAATGATCACGAAAATATCTCAACAAGCAACTGCTTCTCA
AATTACAAATTTAAGTAATTTAGTGATTTCACTAACGAGTACTATTATTTGTAGAGTTGCTTTTGGTATTAGATATGACG
ATTGGAAATTTGCATCAATACGATGGTTTAACCCCTCATATTTATTTTTCGAAACTTGCCAAGAAATATGGAAAAATATTTTCATTAAAACTTGG
TTCTACTCCAATAGTTGTAATTTCTTCAGCAAAATTAGCAAAAGAAGTGTTAAAAATACAAGATTTAACATTTTGTAGTAGACCTTCTTTTCTTG
GTCAACAAAAATTGTCTTACAATGGTCGTGATATTGGCTTTGCACCTTATAATGACTATTGGAGAGAAATGCGAAAAATTTGCGTTGTTCATTTG
TTCAGTTTAAAAAAAGTACAATCCTTTAGTCCGGTTCGTGAAGATGAAGTATCAAGAATGATCACGAAAATATCTCAACAAGCAACTGCTTCTCA
AATTACAAATTTAAGTAATTTAGTGATTTCACTAACGAGTACTATTATTTGTAGAGTTGCTTTTGGTATTAGATATGACG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399101] | SGN-U577528 | Tomato 200607 | Build 2 | 5 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195702 [Download][View] | Facility Assigned ID: FA0AAD2BH03RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.936 | Expected Error Rate: 0.0003 | Quality Trim Threshold: 14.5 |
Working
