EST details — SGN-E537541
Search information |
Request: 537541 | Match: SGN-E537541 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C188821 | Clone name: TUS-56-D3 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C48390 [cLEI-4-G19] | Trace: SGN-T80316 | EST: SGN-E267169 | Direction: 5' | Facility: TIGR |
Clone: SGN-C188821 [TUS-56-D3] | Trace: SGN-T338413 | EST: SGN-E537538 | Direction: 3' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E537541 | Length: 674 bp (861 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E537541 [] (trimmed)
TTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTG
ATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAA
GTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCAGTGATGAGGAGGAAGA
AATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAAT
CGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGT
GGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATT
TTTGGACAAATTAAGGAGAAATTACAGGATACCACTCAAGGCTGAAGAGGAAAGGAGAAGGAAAAGACTAAATGAATGAAAGTTTTTTTTATTTT
ACTTTTGGG
ATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAA
GTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCAGTGATGAGGAGGAAGA
AATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAAT
CGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGT
GGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATT
TTTGGACAAATTAAGGAGAAATTACAGGATACCACTCAAGGCTGAAGAGGAAAGGAGAAGGAAAAGACTAAATGAATGAAAGTTTTTTTTATTTT
ACTTTTGGG
Unigenes |
Current Unigene builds | |||||
[SGN-E537541] | SGN-U581375 | Tomato 200607 | Build 2 | 231 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T338416 [Download][View] | Facility Assigned ID: TUS56D03_Q1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.929 | Expected Error Rate: 0.0106 | Quality Trim Threshold: 14.5 |