EST details — SGN-E537556
| Search information |
| Request: 537556 | Match: SGN-E537556 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C188830 | Clone name: TUS-56-D12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C48436 [cLEI-4-I9] | Trace: SGN-T80184 | EST: SGN-E267037 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C188830 [TUS-56-D12] | Trace: SGN-T348785 | EST: SGN-E547910 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E537556 | Length: 814 bp (908 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E537556 [] (trimmed)
GTTCTCTTAGACATGTTTTACTTTGCAAGGACAGACACCTTGATCGTCGCAAGAGGCTCATAATTGCAATGGATGCTGCATTTGGAATGGAATAT
TTGCACTCGAAGAATATTGTGCATTTTGATCTGAAATGTGACAATTTGCTTGTCAACTTAAAGGATCCTTCTCGACCCATTTGTAAGGTGGCTGA
TTTTGGGCTGTCAAAAATCAAGAGAAATACCTTGGTTACTGGTGGTGTCAGGGGAACGCTTCCATGGATGGCTCCAGAGCTATTGAATGGTGGAA
GTAATAAGGTTTCCGAGAAGGTCGACGTCTTTTCCTTTGGGATTGTGCTCTGGGAAATCCTCACTGGCGAAGAACCTTATGCAAATATGCATTAT
GGAGCAATTATAGGTGGTATTGTCAACAACACATTGAGACCGCCTGTGCCAAGCTTCTGTGACACTGAGTGGAGAATGCTCATGGAACAGTGTTG
GGCTCCAGATCCTGCCATCCGCCCATCTTTCACTGAAATTGCCAGACGGTTACGTACCATGGCTGCTGCCTGTCCAACAAGACCACACGCTCATT
CAGCCAAGTGATGGCGTTGTGTCTATCCCTTCTTTCTTGGTATCTGCATGAAAGTTTCTTTTACAAGTATACTCTGTTTATTCTGTATTATTCAG
AGAGAGGAGACTGGTCTCCTTTAGATTCTGAAACACATTATATGGGAAACATGAAAAACTTTTTATATATGTAAAACATCATTTTGTATCTGTGA
TAGATCGAAATGTAATATTTCTGGTGATATAATAATTATAACTATTACCTGTCT
TTGCACTCGAAGAATATTGTGCATTTTGATCTGAAATGTGACAATTTGCTTGTCAACTTAAAGGATCCTTCTCGACCCATTTGTAAGGTGGCTGA
TTTTGGGCTGTCAAAAATCAAGAGAAATACCTTGGTTACTGGTGGTGTCAGGGGAACGCTTCCATGGATGGCTCCAGAGCTATTGAATGGTGGAA
GTAATAAGGTTTCCGAGAAGGTCGACGTCTTTTCCTTTGGGATTGTGCTCTGGGAAATCCTCACTGGCGAAGAACCTTATGCAAATATGCATTAT
GGAGCAATTATAGGTGGTATTGTCAACAACACATTGAGACCGCCTGTGCCAAGCTTCTGTGACACTGAGTGGAGAATGCTCATGGAACAGTGTTG
GGCTCCAGATCCTGCCATCCGCCCATCTTTCACTGAAATTGCCAGACGGTTACGTACCATGGCTGCTGCCTGTCCAACAAGACCACACGCTCATT
CAGCCAAGTGATGGCGTTGTGTCTATCCCTTCTTTCTTGGTATCTGCATGAAAGTTTCTTTTACAAGTATACTCTGTTTATTCTGTATTATTCAG
AGAGAGGAGACTGGTCTCCTTTAGATTCTGAAACACATTATATGGGAAACATGAAAAACTTTTTATATATGTAAAACATCATTTTGTATCTGTGA
TAGATCGAAATGTAATATTTCTGGTGATATAATAATTATAACTATTACCTGTCT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E537556] | SGN-U577536 | Tomato 200607 | Build 2 | 26 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T338431 [Download][View] | Facility Assigned ID: TUS56D12_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.974 | Expected Error Rate: 0.0021 | Quality Trim Threshold: 14.5 |
Working
