EST details — SGN-E538027
| Search information |
| Request: 538027 | Match: SGN-E538027 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189106 | Clone name: TUS-56-O24 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C46497 [cLEI-12-M12] | Trace: SGN-T82282 | EST: SGN-E267863 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189106 [TUS-56-O24] | Trace: SGN-T338905 | EST: SGN-E538030 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E538027 | Length: 843 bp (876 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E538027 [] (trimmed)
AGCTTATACTGATGATTACATCATAATTATCTTCTTCTTCTTCCTTAATTTTTCTCCAGTTTCCTCTGTTGATGTCTGCAACCCAACTTCATGCT
CAGAAATGGGTATCGGACCGGAAATCCGGTTCCCTTTCCGGTTAAAAGACCGGCAATCGGACCGGTGCGGTTACCCCGGTTTCGATCTTTCGTGC
AATGAAAGAGGCCAAACAATCATGTCACTTCCTCATTCAGGTGATTTTTTAGTTACAGAGATTGATTACTCTGCTCAATCTGTAATGCTTTATGA
TCCAGATTTCTGCCTTGTCAAACGACTCATCGGTTTTAATGTCACAAATTCGCCATTCAAAGCTGATCATCAACGAAATTACACAATCGTCAGGT
GTACTTCAGATGACTGGTTAAGTTACCCAAATTATCAGGTAGCGATTCCGTTGTATTGCCGGGGAGTTACGAGCAGAAATGAGGCGATTTTGGCG
ATGCCGCCGAGTATCTATGAGCAAGAAAAACCAGTTGGTTGTAAATTGATTAATTCTAGAGTTTCTGTTCCTCTGCAATTGGAAGATTCGCAGTT
TTGGTCTCCAATGGAAGGTCTTGTGTTAACTTGGAGTGAACCAAGTTGCAGGATTTGTGAAAATCAAGGGAAACTTTGTGCTTTTAAGAGTGATA
CTGGATCTGATATTGCTTGTTCAAATCCTCCTCCTTCTAAAGGACTTCCAAGAGGAGCCAAATATGGCATTATAATTGGAGTTGGGGTGCCAGGT
TTTGTATGCTTAATTGGAATAATAGGCTTTGCATTTGGTAAACTTAAAGTTTACACTCTTCGTCGTGATTTGAACTCTGATCT
CAGAAATGGGTATCGGACCGGAAATCCGGTTCCCTTTCCGGTTAAAAGACCGGCAATCGGACCGGTGCGGTTACCCCGGTTTCGATCTTTCGTGC
AATGAAAGAGGCCAAACAATCATGTCACTTCCTCATTCAGGTGATTTTTTAGTTACAGAGATTGATTACTCTGCTCAATCTGTAATGCTTTATGA
TCCAGATTTCTGCCTTGTCAAACGACTCATCGGTTTTAATGTCACAAATTCGCCATTCAAAGCTGATCATCAACGAAATTACACAATCGTCAGGT
GTACTTCAGATGACTGGTTAAGTTACCCAAATTATCAGGTAGCGATTCCGTTGTATTGCCGGGGAGTTACGAGCAGAAATGAGGCGATTTTGGCG
ATGCCGCCGAGTATCTATGAGCAAGAAAAACCAGTTGGTTGTAAATTGATTAATTCTAGAGTTTCTGTTCCTCTGCAATTGGAAGATTCGCAGTT
TTGGTCTCCAATGGAAGGTCTTGTGTTAACTTGGAGTGAACCAAGTTGCAGGATTTGTGAAAATCAAGGGAAACTTTGTGCTTTTAAGAGTGATA
CTGGATCTGATATTGCTTGTTCAAATCCTCCTCCTTCTAAAGGACTTCCAAGAGGAGCCAAATATGGCATTATAATTGGAGTTGGGGTGCCAGGT
TTTGTATGCTTAATTGGAATAATAGGCTTTGCATTTGGTAAACTTAAAGTTTACACTCTTCGTCGTGATTTGAACTCTGATCT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E538027] | SGN-U567831 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T338902 [Download][View] | Facility Assigned ID: TUS56O24_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.975 | Expected Error Rate: 0.0021 | Quality Trim Threshold: 20.5 |
Working
