EST details — SGN-E538339

Search information 
Request: 538339Match: SGN-E538339
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C189310Clone name: TUS-57-H12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C63768 [cLEM-2-N19] Trace: SGN-T83958 EST: SGN-E269493 Direction: 5' Facility: TIGR
Clone: SGN-C189310 [TUS-57-H12] Trace: SGN-T339211 EST: SGN-E538336 Direction: 3' Facility: INRA (MWG)
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Sequence 
Sequence Id: SGN-E538339Length: 680 bp (941 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E538339 [] (trimmed) GTAGCAGTCAATGTATATGCATTCAGTGACAAATATACTGACATAGCTACTATAGGTACGCTGGCAAAGTACACAGGTGGTCAGGTGTACTACTA
TCCAAGTTTTCAAGCGTCCGTTCACAAAGATAGATTGCGTCACGAGTTAACCCGAGATCTTACAAGGGAGACTGCTTGGGAGTCTGTCATGCGCA
TAAGATGTGGAAAAGGTGTTCGTTTTACAACATATCATGGGAACTTCATGCTGAGATCCACTGATCTGATAGCACTTCCTGCTGTTGACTGTGAT
AAAGAATATGCAATGCAGTTATCCCTTGAAGAAACACTACTCACTTCCCAGACAGTATTTTTCCAAATTGCTCTACTATACACATCATCTTCTGG
AGAAAGGCGCATTAGAGTACACACAGCAGCAGCACCGGTTGTTTCAGATTTAGGAGAAATGTATCGCCTACCTGATACTGGTGCTATCATTTCTC
TTTTTACCAGGCTTGCCATTGAGAAAACTCTGACCTCTAAATTAGAGGAGGCTCGAAATTCTATTCAACTCAGGATTGTGAAAGCTCTTAGAGAA
TATCGAAATCTCCATGCTGTTCAGCACCGTGTGGCTGGAAGGATGATTTATCCAGAATCTTTAAAGTACTTGCCATTATATGGATTAGCTTTATG
CAAAAAACTGCCCTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E538339] SGN-U571604 Tomato 200607 Build 2 34 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T339214 [Download][View] Facility Assigned ID: TUS57H12_Q1
Submitter: Koni Sequencing Facility: INRA (MWG)
Funding Organization: INRA
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.973 Expected Error Rate: 0.0071 Quality Trim Threshold: 14.5