EST details — SGN-E538408

Search information 
Request: 538408Match: SGN-E538408
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C189358Clone name: TUS-57-J12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C61378 [cLEM-17-I18] Trace: SGN-T85848 EST: SGN-E269706 Direction: 5' Facility: TIGR
Clone: SGN-C189358 [TUS-57-J12] Trace: SGN-T339286 EST: SGN-E538411 Direction: 5' Facility: INRA (MWG)
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Sequence 
Sequence Id: SGN-E538408Length: 790 bp (887 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E538408 [] (trimmed) ACAGAAAGGAAAAGGCAAATTTATTTCATTATTTCATATTCTATGCCTGCAACTACAAAAAAAAAAAAGAAGTAATTTGCTTTAAATTCCATAAC
CATGACTATGTCCATAAATGAATCCAACAAAAAAGAAATAAACCTTCTCTGAGAAATTTCAACATTTTTTTGAACAGATGAACCTGTATCCCTAT
ACCCCTCCAAACCTCCAACCAATTTGGCATATCAATATCTTACTTGGTTACCCCCTTTTCTTGATTCCAATTTCTAATATTTCGATTTTCCGACT
TCACTGACTCTAGATTCTGAATTCGCGATTGTCTTTACTAGACAAGAAAATGCAAACCAGTATAGCACAATTTGTTTCCAAACTCTGCAGACAAT
TTACATACAAGGAATGATAAAGACCATCCAAAGGACTTGATTGAGCTATGTGCAAACAACTCTGTAACCAAATTTTGAACTGCAATATTCTACAA
AATCGCACTGCCAATATTCCCCTGATCAAGCTTGTATCGAATGTTCCCGGATAGACTCTTTGAGTCCTGTTTGGCATCTTCAAGATCTGTAACCT
GAACAGCAGTACATTCCTTCGGATTATCAAATGAAGACAATGAAAACTGCTTAGAAACAACTCCAACATCAAAATAAATGACCCCAGAACTTGAA
GATGACACATAAATTTTCTTAACTTGAAACCACAAAAACAAATCTTTAGCAGAGATCCCAGAAATCAAATCAATCTGACCTAAAACTCACCTCCC
TGAAACATTCCTTTCATAGTGCAATTCATT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E538408] SGN-U580044 Tomato 200607 Build 2 21 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T339283 [Download][View] Facility Assigned ID: TUS57J12_P1
Submitter: Koni Sequencing Facility: INRA (MWG)
Funding Organization: INRA
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: No vector sequence detected
Passed all screens and filters
Sequence Entropy: 0.929 Expected Error Rate: 0.0018 Quality Trim Threshold: 20.5