EST details — SGN-E538558

Search information 
Request: 538558Match: SGN-E538558
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C189457Clone name: TUS-57-N15
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C63292 [cLEM-25-A21] Trace: SGN-T87661 EST: SGN-E272946 Direction: 5' Facility: TIGR
Clone: SGN-C189457 [TUS-57-N15] Trace: SGN-T339435 EST: SGN-E538560 Direction: 5' Facility: INRA (MWG)
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Sequence 
Sequence Id: SGN-E538558Length: 814 bp (890 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E538558 [] (trimmed) AATTAGTACTTAGATACTTTATTATTATTAAAAGATACATAACAATAACAACTAAGAGAAATAACATACAAAATAAATAGATGATCAAGTGCACA
TAACTAATTGTATTTGCTTTACACTTTCAATCCAAATTTCCAACTTTTCCAATCCTCAAGTAAATAGGATAAATCACTTTTTTCTCACTCTTCCC
ATCTTCATTCCAAGCACTTGTAAATTTTTCAACAACATCTTCACTTAACAACTCAACACCCTTTTCTTTTGCAGTTTGATAAGCTGACCATGACT
TCAAGTATGTAAAACAAGAATCCAAGTCCATAACTTTCTCAATCTTGAACTCAAATGGTCCATTATGATCACATCCATCTATAGCCTCAAATGGA
AAATCAATAGTTTCATACTTTTCATCGACCAATTTTCTTGGTGATTCCCAATAAGGTCCAGCATCACTTGTGTAAAATTTATCAAATATTGCATC
TACTGAGTTGTTTATTTTAGGTGTAGTGTAACACCATGATGCTATAACACCATTTGGTTTCTTGAGTAACCATTTAACATGTTCATAAAAAGTTG
GTAGATCAAACCAATGCATTGCTTGTGCAATTGTTACTAAATCTACACTTGATTCTGATCCTATTTTTGTTTCGATTTCGGATTTTGACAACTTA
GGAGAGGTACATATGTATTGAACATTTGGAACCTTTGCTGCAAATTCAAGCTGCTTTGGACTTGTGGCCAGGCTGCTCAATCTTTAGCTAAGCTT
TACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTACAGACACAAATC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E538558] SGN-U580752 Tomato 200607 Build 2 98 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T339433 [Download][View] Facility Assigned ID: TUS57N15_P1
Submitter: Koni Sequencing Facility: INRA (MWG)
Funding Organization: INRA
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.934 Expected Error Rate: 0.0038 Quality Trim Threshold: 12.5