EST details — SGN-E538558
| Search information |
| Request: 538558 | Match: SGN-E538558 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189457 | Clone name: TUS-57-N15 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C63292 [cLEM-25-A21] | Trace: SGN-T87661 | EST: SGN-E272946 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189457 [TUS-57-N15] | Trace: SGN-T339435 | EST: SGN-E538560 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E538558 | Length: 814 bp (890 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E538558 [] (trimmed)
AATTAGTACTTAGATACTTTATTATTATTAAAAGATACATAACAATAACAACTAAGAGAAATAACATACAAAATAAATAGATGATCAAGTGCACA
TAACTAATTGTATTTGCTTTACACTTTCAATCCAAATTTCCAACTTTTCCAATCCTCAAGTAAATAGGATAAATCACTTTTTTCTCACTCTTCCC
ATCTTCATTCCAAGCACTTGTAAATTTTTCAACAACATCTTCACTTAACAACTCAACACCCTTTTCTTTTGCAGTTTGATAAGCTGACCATGACT
TCAAGTATGTAAAACAAGAATCCAAGTCCATAACTTTCTCAATCTTGAACTCAAATGGTCCATTATGATCACATCCATCTATAGCCTCAAATGGA
AAATCAATAGTTTCATACTTTTCATCGACCAATTTTCTTGGTGATTCCCAATAAGGTCCAGCATCACTTGTGTAAAATTTATCAAATATTGCATC
TACTGAGTTGTTTATTTTAGGTGTAGTGTAACACCATGATGCTATAACACCATTTGGTTTCTTGAGTAACCATTTAACATGTTCATAAAAAGTTG
GTAGATCAAACCAATGCATTGCTTGTGCAATTGTTACTAAATCTACACTTGATTCTGATCCTATTTTTGTTTCGATTTCGGATTTTGACAACTTA
GGAGAGGTACATATGTATTGAACATTTGGAACCTTTGCTGCAAATTCAAGCTGCTTTGGACTTGTGGCCAGGCTGCTCAATCTTTAGCTAAGCTT
TACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTACAGACACAAATC
TAACTAATTGTATTTGCTTTACACTTTCAATCCAAATTTCCAACTTTTCCAATCCTCAAGTAAATAGGATAAATCACTTTTTTCTCACTCTTCCC
ATCTTCATTCCAAGCACTTGTAAATTTTTCAACAACATCTTCACTTAACAACTCAACACCCTTTTCTTTTGCAGTTTGATAAGCTGACCATGACT
TCAAGTATGTAAAACAAGAATCCAAGTCCATAACTTTCTCAATCTTGAACTCAAATGGTCCATTATGATCACATCCATCTATAGCCTCAAATGGA
AAATCAATAGTTTCATACTTTTCATCGACCAATTTTCTTGGTGATTCCCAATAAGGTCCAGCATCACTTGTGTAAAATTTATCAAATATTGCATC
TACTGAGTTGTTTATTTTAGGTGTAGTGTAACACCATGATGCTATAACACCATTTGGTTTCTTGAGTAACCATTTAACATGTTCATAAAAAGTTG
GTAGATCAAACCAATGCATTGCTTGTGCAATTGTTACTAAATCTACACTTGATTCTGATCCTATTTTTGTTTCGATTTCGGATTTTGACAACTTA
GGAGAGGTACATATGTATTGAACATTTGGAACCTTTGCTGCAAATTCAAGCTGCTTTGGACTTGTGGCCAGGCTGCTCAATCTTTAGCTAAGCTT
TACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTACAGACACAAATC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E538558] | SGN-U580752 | Tomato 200607 | Build 2 | 98 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T339433 [Download][View] | Facility Assigned ID: TUS57N15_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.934 | Expected Error Rate: 0.0038 | Quality Trim Threshold: 12.5 |
Working
