EST details — SGN-E538679
| Search information |
| Request: 538679 | Match: SGN-E538679 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189532 | Clone name: TUS-58-A18 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C69071 [cLEN-8-N9] | Trace: SGN-T88754 | EST: SGN-E274058 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189532 [TUS-58-A18] | Trace: SGN-T339551 | EST: SGN-E538676 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E538679 | Length: 783 bp (898 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E538679 [] (trimmed)
CCACAATTGCCATTGTATGAGAGTTTGTGTATTCCTGATTTGCTTAATCCTCAAAGTCTTCAAAATTTTGCTAATATCTTTTGGCCTCAGGGTAA
TCAACATTTCTGCAATTTGGTAAAGTCTTATTCTAATCCACTTGTGGAATTGGATGAGATTTTGAAAAGGATGATTTCGGAGAATTTGAGATTAA
AAATTCACATTGATGAATTGTTGAATGCCAATTATTTCCTATTTAGATTTACACATTACAAGGGATCATCAATTACTGGTGGAGATGAGAATAAC
AAAGTTGCTGGATTGGGTGGCCACACAGATGGTAACTTCTTGACTTTTATATCGCAAAATCAAGTCAATGGATTGCAAATCAACAAAAATGGAGA
ATGGATTGATGTGAATATTTCACCAAATTCTTATGTTGTTTTGGCTGGTGATTCCTTCAAAGCTTGGACAAATGGTCGATTGCATTCTCCTCTTC
ACAGAGTAACAATGTCCGGAGAAAATGATAGACTCTCCATTCAATTATTTTCATTATCAAAACCAGGTCACTTCATCGAGGCACCAAAAGAACTA
GTGGATGAAGAACACCCTTTACTCTTCAAGCCATTTGAAATTATTGGATTATTTGAGTATGGTACCACAGAAGCTGGCTATACAGCTCCTCCAAG
TGATCTTCTCAAGAGTTATTGCGGTGTTTGATATGCTAATTGCGAATTTCCGCTTCAGCAACCAACTTTTCTAATAAGTTTCGTGTGAAAAATCG
TGTGTTTAATTATTATGCATTTT
TCAACATTTCTGCAATTTGGTAAAGTCTTATTCTAATCCACTTGTGGAATTGGATGAGATTTTGAAAAGGATGATTTCGGAGAATTTGAGATTAA
AAATTCACATTGATGAATTGTTGAATGCCAATTATTTCCTATTTAGATTTACACATTACAAGGGATCATCAATTACTGGTGGAGATGAGAATAAC
AAAGTTGCTGGATTGGGTGGCCACACAGATGGTAACTTCTTGACTTTTATATCGCAAAATCAAGTCAATGGATTGCAAATCAACAAAAATGGAGA
ATGGATTGATGTGAATATTTCACCAAATTCTTATGTTGTTTTGGCTGGTGATTCCTTCAAAGCTTGGACAAATGGTCGATTGCATTCTCCTCTTC
ACAGAGTAACAATGTCCGGAGAAAATGATAGACTCTCCATTCAATTATTTTCATTATCAAAACCAGGTCACTTCATCGAGGCACCAAAAGAACTA
GTGGATGAAGAACACCCTTTACTCTTCAAGCCATTTGAAATTATTGGATTATTTGAGTATGGTACCACAGAAGCTGGCTATACAGCTCCTCCAAG
TGATCTTCTCAAGAGTTATTGCGGTGTTTGATATGCTAATTGCGAATTTCCGCTTCAGCAACCAACTTTTCTAATAAGTTTCGTGTGAAAAATCG
TGTGTTTAATTATTATGCATTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E538679] | SGN-U580211 | Tomato 200607 | Build 2 | 38 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T339554 [Download][View] | Facility Assigned ID: TUS58A18_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.947 | Expected Error Rate: 0.0028 | Quality Trim Threshold: 14.5 |
Working
