EST details — SGN-E539149
| Search information |
| Request: 539149 | Match: SGN-E539149 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189806 | Clone name: TUS-58-M4 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C74275 [cLER-8-I16] | Trace: SGN-T93827 | EST: SGN-E279925 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189806 [TUS-58-M4] | Trace: SGN-T340022 | EST: SGN-E539147 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539149 | Length: 797 bp (848 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E539149 [] (trimmed)
CACGGTGAGGCAGATTCAAAACTGAAGGCTCTAGAGAAGCATGTTCAAGAGGTTCACAGATCTGTACAGATTCTAAGAGATAAACAAGAACTTGC
CGAAACTCAAAAGGAGCTGGCCAAGCTTCAGCTTGCACAGAAAGGATCAACTTCATCTAGCAATTCTCAGCAGAACGAGGAGAGAAGTGCTCAAC
ACCTGTCTGATGACAAAAAAAGTGACGACGCACCTGAAGTGCATGGACAGCAACTGGCTCTTGCACTACCCCATCAAGTGGCACCCCAGGCTTCT
CTTACTAACCGACCTGTGGAGCAGCCACAACAGCCACCTGTGCCTCCTCCACAATCAATTCCACCCCAAAGTATGCCACAGTCACAAGGGTATTA
TTTACCCCCTCCTCAGATGGCAAATCAACAAGCTCCAACTCAGTTGTCTCAAGGTCAATTTTTGTCGTCTGATCCGCAGTACAGAAATCCTCAAA
TGCAAGTAACACCACAGCGTGCAGCACCTCAGGTGAATCAGACACAACAACTCCAATCAATGCCCCAATATCAGCAGCAGTGGGCACAGCAGGTA
CCCCAACAGGTTCAACAGTCACAGATTCCAAATATGCAACAGCAAGCTAGACCTGCATCACCTGCTGTTTATCCCTCTTATCTGCATAGTCAACC
AAATCCTACTCCTGAGACAATGCCCAATAGTATGCCCATGCAAGTGCCATTTTCTGGAGTATCTCAACCAGTTGCTAGCCGTCCCGAATCAATGC
CTTATGGCTATGATAGGTCTGGTAGGCCCCTTCAGCA
CGAAACTCAAAAGGAGCTGGCCAAGCTTCAGCTTGCACAGAAAGGATCAACTTCATCTAGCAATTCTCAGCAGAACGAGGAGAGAAGTGCTCAAC
ACCTGTCTGATGACAAAAAAAGTGACGACGCACCTGAAGTGCATGGACAGCAACTGGCTCTTGCACTACCCCATCAAGTGGCACCCCAGGCTTCT
CTTACTAACCGACCTGTGGAGCAGCCACAACAGCCACCTGTGCCTCCTCCACAATCAATTCCACCCCAAAGTATGCCACAGTCACAAGGGTATTA
TTTACCCCCTCCTCAGATGGCAAATCAACAAGCTCCAACTCAGTTGTCTCAAGGTCAATTTTTGTCGTCTGATCCGCAGTACAGAAATCCTCAAA
TGCAAGTAACACCACAGCGTGCAGCACCTCAGGTGAATCAGACACAACAACTCCAATCAATGCCCCAATATCAGCAGCAGTGGGCACAGCAGGTA
CCCCAACAGGTTCAACAGTCACAGATTCCAAATATGCAACAGCAAGCTAGACCTGCATCACCTGCTGTTTATCCCTCTTATCTGCATAGTCAACC
AAATCCTACTCCTGAGACAATGCCCAATAGTATGCCCATGCAAGTGCCATTTTCTGGAGTATCTCAACCAGTTGCTAGCCGTCCCGAATCAATGC
CTTATGGCTATGATAGGTCTGGTAGGCCCCTTCAGCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539149] | SGN-U583083 | Tomato 200607 | Build 2 | 15 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340024 [Download][View] | Facility Assigned ID: TUS58M04_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.972 | Expected Error Rate: 0.0025 | Quality Trim Threshold: 14.5 |
Working
