EST details — SGN-E539316

Search information 
Request: 539316Match: SGN-E539316
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C189903Clone name: TUS-59-A5
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C70072 [cLER-13-H5] Trace: SGN-T94637 EST: SGN-E283943 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E539316Length: 712 bp (872 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E539316 [] (trimmed) GGATCCAAATCTATATTATGGGGGTTACGCTGGGTATGGAAATTACCCTCCACAGCAGCAACAACCACAGTGATCTCTGCTGGTTAAAGGAGTCG
ACGAAAGCTTCCTAGCACAGTAATGCAACGATGTAGAAAGGGAGGGGCATGGATTCGAAGTTTGCATCAGATTTAGTATAAGATAAACTACTGTA
GGCTGGTTCTTGAAGATCAGTATTTATGGTTGTGTTCAACCATCGCTTACTTTTTCATTAGTTACCTTCTGTTATTTTTCATTGGTTTTTTTGTT
GATCTTTTTGTTTTTTGCGCTTTTATGTTTACTTTTCATGAGTCCAACTTGGTACTTGGATTTTTGTTCTAGTTGGTTTTTACAAGGCACAAAGA
GGTTATACATAACGAGTAAACGTATATTGTAATCTGCTATAATTTATGTATGGACAAACAATGGTATGGTATTTTATTTAAAAATAGTTTTTCGC
TTGGAAAAAAAAAAAAAAAAAAAAAACTCGAGACCTCAGGCATTGGTATTTCAAAGGCTGGCATAAGCGGGGGTGGTAGTCTTTCTTCCCATGTA
GACAAATTCTTCGAGGCAATTGACATAAAGATTCAGAATGGATATGGCTTGACAGAGTCAGCTCCTGTGATTGCTGCACGGAGTCTTACATGTAA
CGTGCTTGGCTCAATTGGTCGCCCCATTCNGCATGTAGAGGTAAAAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E539316] SGN-U581411 Tomato 200607 Build 2 15 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T340191 [Download][View] Facility Assigned ID: TUS59A05_Q1
Submitter: Koni Sequencing Facility: INRA (MWG)
Funding Organization: INRA
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.959 Expected Error Rate: 0.0012 Quality Trim Threshold: 14.5