EST details — SGN-E539326
| Search information |
| Request: 539326 | Match: SGN-E539326 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189910 | Clone name: TUS-59-A12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C70125 [cLER-13-K12] | Trace: SGN-T94774 | EST: SGN-E284080 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189910 [TUS-59-A12] | Trace: SGN-T340203 | EST: SGN-E539328 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539326 | Length: 790 bp (886 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E539326 [] (trimmed)
ACTGATGCTAGCGCTGCTTCTCTTAGAACAAAACTGCAAGTCAAGTAGTTGAGGATCATATGATAAAATACAATAGAATGACTGCGGGTACAATT
CTTAGTTCCTAAACCTACAAACAATGTTTATTTATACAACTTATGCAACAAATGGGTCAAACGACGGGTTTTAATTTAGAACTCATAAATCATCA
GCTGGTGGAATCTCACTCAAGTCCAGTCCATCCTCAGGTAGTTCAGAGGTCAGCGGACCTAAAATCCCGTCAGAGTTGAGGGTCAATCCACTCTC
AGGCTGGAATCTCAGCATATCTGCACGGGCCATGGCTTCAGCTTGGGCAATTCTCTGCCTGAATGTCTGGGCCATCTCTTCAGCCTTCTCAAAGA
CAAGCTTTGGATTGCGAATCATGTCACCAGGTGTAGGCTCTAGCTTCTTTGTAGAAAGGCTCACTCGACTACAATTCTCCTGGAGGAGGTGGCTA
CAATTCTGCTGGAGGAGGTGGCTACGGTAGCAGTAGTGGCTATAACTATGGCGGGGGGGAAGGCAGAAATTTTGCAGGTTCTGGAGGTTACCAAA
CCAACAATTACGGTGGTGGATTTTCTAGTGGTCACAGTTCTGCTGGAGGCTACGGTAGCTATGGAGGTGGTAGTAGCAGCTATGGGAACAACAGT
TCCCCTGTTGAGGGTGGCAACTACGGAAGCAGCACTCCAAACATCAATTATTCTGGTCAAGGCAGTAGTTTCTCAGGTGGTTATGGTGGTGGCAA
CAGTGGGAATGACTTTGGTGGAGCTCCTAG
CTTAGTTCCTAAACCTACAAACAATGTTTATTTATACAACTTATGCAACAAATGGGTCAAACGACGGGTTTTAATTTAGAACTCATAAATCATCA
GCTGGTGGAATCTCACTCAAGTCCAGTCCATCCTCAGGTAGTTCAGAGGTCAGCGGACCTAAAATCCCGTCAGAGTTGAGGGTCAATCCACTCTC
AGGCTGGAATCTCAGCATATCTGCACGGGCCATGGCTTCAGCTTGGGCAATTCTCTGCCTGAATGTCTGGGCCATCTCTTCAGCCTTCTCAAAGA
CAAGCTTTGGATTGCGAATCATGTCACCAGGTGTAGGCTCTAGCTTCTTTGTAGAAAGGCTCACTCGACTACAATTCTCCTGGAGGAGGTGGCTA
CAATTCTGCTGGAGGAGGTGGCTACGGTAGCAGTAGTGGCTATAACTATGGCGGGGGGGAAGGCAGAAATTTTGCAGGTTCTGGAGGTTACCAAA
CCAACAATTACGGTGGTGGATTTTCTAGTGGTCACAGTTCTGCTGGAGGCTACGGTAGCTATGGAGGTGGTAGTAGCAGCTATGGGAACAACAGT
TCCCCTGTTGAGGGTGGCAACTACGGAAGCAGCACTCCAAACATCAATTATTCTGGTCAAGGCAGTAGTTTCTCAGGTGGTTATGGTGGTGGCAA
CAGTGGGAATGACTTTGGTGGAGCTCCTAG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539326] | SGN-U577160 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340201 [Download][View] | Facility Assigned ID: TUS59A12_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.978 | Expected Error Rate: 0.0026 | Quality Trim Threshold: 14.5 |
Working
