Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-E539440

Search information 
Request: 539440Match: SGN-E539440
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C189975Clone name: TUS-59-D5
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C71115 [cLER-16-O19] Trace: SGN-T95474 EST: SGN-E284201 Direction: 5' Facility: TIGR
Clone: SGN-C189975 [TUS-59-D5] Trace: SGN-T340312 EST: SGN-E539437 Direction: 3' Facility: INRA (MWG)
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E539440Length: 684 bp (905 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E539440 [] (trimmed) TGAAATGAGAGTTGGAGGAATCGAACGTCAAACCTACAAGTAGTGCACAAGAAAAAAAATACTATCTCGCATTCGTCCTCTTCAAATTGCTAGTG
ATAATGGGGTGTTGCAGTAGCAAAGCCGCAGATACTAAAGCTACCCGCATGGCGCGATGGCGTTCAACTGGCATAGTTGCTTTACGCGACTCCAA
ATTGAAGTCTTTTCCTGATGAAGTTATTTCCCTGGAGAAATCTGTACGCACCCTTGACTTGACACACAATAAATTGGTTCAAATACCCATGGAGA
TCAACAAGCTAATTAACTTGCAGCGTCTAATTTTGGCTGATAACCTTATTGATAATCTCCCGGTGAACCTGGGATTGCTTAAGTCTTTGAAAGTT
GCAACACTTGATGGGAACCGAATCAGAGCATTGCCTGATGAATTGGGCCAGTTGGTGAAGCTTGAGCGTTTGTCTGTCTCAGGAAACTTGTTAAT
GAGCTTGCCTGAGACTATTGGGAGCTTGCAGAATTTGGTACTGTTGGACATTTCAAACAATAAGTTAAAGTTTTTTCCTGAATCAATTGGAAGTT
GCTTCTCTTTGGAAGAATTGCAAGCAAATGATAATTCCATTGAAGAACTTCCTGTATCAGTGTGCAATCTTTGTCAACTAAAATCACTTTGCCTG
AACAAAAACAATCTCAATC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E539440] SGN-U583370 Tomato 200607 Build 2 3 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T340315 [Download][View] Facility Assigned ID: TUS59D05_Q1
Submitter: Koni Sequencing Facility: INRA (MWG)
Funding Organization: INRA
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.971 Expected Error Rate: 0.0076 Quality Trim Threshold: 14.5