EST details — SGN-E539750
Search information |
Request: 539750 | Match: SGN-E539750 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C190157 | Clone name: TUS-59-K19 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C77752 [cLES-3-C5] | Trace: SGN-T97751 | EST: SGN-E284730 | Direction: 5' | Facility: TIGR |
Clone: SGN-C190157 [TUS-59-K19] | Trace: SGN-T340627 | EST: SGN-E539752 | Direction: 5' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E539750 | Length: 786 bp (907 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E539750 [] (trimmed)
ATATTCGACCATTGTATTACACAGCCATTACAAAAAGCCCTAAGGAAACACAAAATGCTTTCAACATGATATTCATAACCACACTGACATGAGAA
GTAAAAAAAACTAGATAAAACTCCGCCTGCATCCAGGATCAACCCACAATAACAAATCTGCATCACTTTAAGCCTTGTTAGCAATGTTGTTAGAA
AGCCAATCAAGTCCCTCATAAAGCCCCTCGCCAGAAGTTGCACAAGTGCTCTGGATGTACCAGTGACGCTGCCTGAGGGAGTGCAGTCCAAGCTT
ATCAGTTATTTCAGCAGCATTCATTGCGTTAGGAAGATCTTGTTTGTTAGCAAATACTAGAAGCACAGCATCCCGAAGTTCATCCTCGTTCAACA
TCCTATGCAATTCATCTCTTGCTTCTACAACACGGTCTCTATCATTGCTATCAACCACAAAAATGAGACCCTGAGTGTTCTGGAAGTAGTGCCTC
CACAATGGACGGATCTTGTCCTGACCTCCGACATCCCAAACAGTGAAGCTGATGTTCTTGTACTCAACAGTCTCCACATTGAAACCAATGGTAGG
AATAGTAGTCACGATCTCTCCCAGCTTCAACTTGTACAATATGGTGGTCTTACCAGCTGCATCAAGACCAACCATTAGAATGCGCATTTCCTTCT
TGGCGAAAAGCCGACTGAAGAGCTTGGTGAATGTGAGCCCCATCACGCTTCCTTGATGATGATCCCTGAAAAGAGCTTTTAGAATGAGGGATCTA
TTGAGAGAGAAACCGGAGNTTTTTTT
GTAAAAAAAACTAGATAAAACTCCGCCTGCATCCAGGATCAACCCACAATAACAAATCTGCATCACTTTAAGCCTTGTTAGCAATGTTGTTAGAA
AGCCAATCAAGTCCCTCATAAAGCCCCTCGCCAGAAGTTGCACAAGTGCTCTGGATGTACCAGTGACGCTGCCTGAGGGAGTGCAGTCCAAGCTT
ATCAGTTATTTCAGCAGCATTCATTGCGTTAGGAAGATCTTGTTTGTTAGCAAATACTAGAAGCACAGCATCCCGAAGTTCATCCTCGTTCAACA
TCCTATGCAATTCATCTCTTGCTTCTACAACACGGTCTCTATCATTGCTATCAACCACAAAAATGAGACCCTGAGTGTTCTGGAAGTAGTGCCTC
CACAATGGACGGATCTTGTCCTGACCTCCGACATCCCAAACAGTGAAGCTGATGTTCTTGTACTCAACAGTCTCCACATTGAAACCAATGGTAGG
AATAGTAGTCACGATCTCTCCCAGCTTCAACTTGTACAATATGGTGGTCTTACCAGCTGCATCAAGACCAACCATTAGAATGCGCATTTCCTTCT
TGGCGAAAAGCCGACTGAAGAGCTTGGTGAATGTGAGCCCCATCACGCTTCCTTGATGATGATCCCTGAAAAGAGCTTTTAGAATGAGGGATCTA
TTGAGAGAGAAACCGGAGNTTTTTTT
Unigenes |
Current Unigene builds | |||||
[SGN-E539750] | SGN-U580248 | Tomato 200607 | Build 2 | 52 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T340625 [Download][View] | Facility Assigned ID: TUS59K19_P1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.981 | Expected Error Rate: 0.0018 | Quality Trim Threshold: 14.5 |