EST details — SGN-E539783
| Search information |
| Request: 539783 | Match: SGN-E539783 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190175 | Clone name: TUS-59-L13 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C77853 [cLES-3-H5] | Trace: SGN-T97565 | EST: SGN-E284544 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190175 [TUS-59-L13] | Trace: SGN-T340656 | EST: SGN-E539781 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539783 | Length: 795 bp (887 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E539783 [] (trimmed)
TTGGAATTCACGTTTTCGATCATTGATTTTTGATCTATCAACTAAAATCTAGAACTAGAACTAGAATCAGATGACGGAAAAAATGGAGGTGACGG
AGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTT
CCGACACTTTATCAACAAAAATCCATGGCTAAACAGGTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAA
AATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGAAATTAATGCATCGATCAGTAT
ACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGATGCAGAA
GTTGTTCCGCTATCACAGAAATGGCCTACTTCCAAAGTTGCTGTATTCTTAATTGATTCAAGGAGGGAGAATTGCTTGCTCATGCATAGTTCTAT
GACCTGCGCAGTTTGGTCCATTATTGAGAAACATCTTGATGTCTCTTCAAGTTATCTTTTTGATTCAAAGTGCATAAGCAAAAAGAAAAAAGCTA
ACATGTTTTCAACCAGTCTTCAGTATGCTGATGGATCATCGCTCCAAGATCTTGCGCTTTCCGCTGCCACAGAAGCAACAGGCATCAATAGAAGT
GATCTGGTTGTCCTAGAAAGCCCCCTTGTATATTC
AGAAGATGTGTGCAACAGAGGAAGTAGTTGATGCGTTGCTGGAATGTATGGTGGAGCCGTTGTTAGGGCGTAGTTCTTGCAAATCAAAGGAAGTT
CCGACACTTTATCAACAAAAATCCATGGCTAAACAGGTGGGTGCTGTTGTGTTTCTCTACAACTACTACTACAGGAAGCAACATCAAGATCAGAA
AATAGAGTTTCTTAATTTTGCATCATTTTGCCAATTAGCTGTAGTTCTGAAACCAACTTTGATGACATATATGAAATTAATGCATCGATCAGTAT
ACACAGACGTGGACAATTTGGAAAGCCAACTTTCACTCACTGAGAAGGAAATTATGAGGGCATGTGATATATCTTCAACGCTGGATGATGCAGAA
GTTGTTCCGCTATCACAGAAATGGCCTACTTCCAAAGTTGCTGTATTCTTAATTGATTCAAGGAGGGAGAATTGCTTGCTCATGCATAGTTCTAT
GACCTGCGCAGTTTGGTCCATTATTGAGAAACATCTTGATGTCTCTTCAAGTTATCTTTTTGATTCAAAGTGCATAAGCAAAAAGAAAAAAGCTA
ACATGTTTTCAACCAGTCTTCAGTATGCTGATGGATCATCGCTCCAAGATCTTGCGCTTTCCGCTGCCACAGAAGCAACAGGCATCAATAGAAGT
GATCTGGTTGTCCTAGAAAGCCCCCTTGTATATTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539783] | SGN-U584235 | Tomato 200607 | Build 2 | 6 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340658 [Download][View] | Facility Assigned ID: TUS59L13_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.966 | Expected Error Rate: 0.0033 | Quality Trim Threshold: 14.5 |
Working
