EST details — SGN-E539892
| Search information |
| Request: 539892 | Match: SGN-E539892 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190240 | Clone name: TUS-59-O6 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C78912 [cLES-7-C9] | Trace: SGN-T98842 | EST: SGN-E288086 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190240 [TUS-59-O6] | Trace: SGN-T340770 | EST: SGN-E539895 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539892 | Length: 806 bp (854 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E539892 [] (trimmed)
ATACAAATTCTAACATGTTAGTACAAGCTTAAGCATAATCCCTAAATCTTTTACAGCAAAAGATGATGTGCATCAAGGCTTTGACTTACATGAAA
CGTTTGAGGAATTCTTTTATCTGATCTATATATGGAGGTCTTGTAGGAATTATATGACCAAAGTCATGTTCAATAACAACGGAGCAGCCATTCTC
AAACACAGAAGCAAGATGTCTACTAGCTTGGTTCTCTATCTGTCTATCTTTACCCTTGTCGTTGCCAAATATATGAAGTGAAGGAACATTGATTG
AACCTTGCTGGCAATTGTTCATATTAACAGCAAACCCCGAGCACAGAATCGCAAATCTGAATTCCATCTCTCCTTTTAGCTTCTGCTGATGTAGG
CAAACTAAAGCGGCCATTGCAGCTCCTTGTGAAAATCCCAATATCCCATCAAAAGGGCCTGTTTTCGAATATAAGTCTTTTACATATGCAATTGA
TTTGTCGAAACCTTCAGTTTGCTTCTGGTACTGAAGAGGATCAAATGGACTATCAGCTATCTTCCAGTCAGAATCGTTCTTTCCCTTGTGATCAG
GTGCAACTAACCATGAGAACTTTTTACTGCAATTCTCTGAGGGTGGACGGTTATTTTCCATTTCTGATGCAGAATCACAGTTTCTACGAATTTGA
TAAACGAATGACAATTCATGAGGTGCATCCACAAAGGCAAGCTCTGCAATGCTCTTGAGTTTCTTGGCCAGCGATGCAGTTCTGCCTTTGAAACC
AGAAGCATTCTGGCGGAAGCCATGAAAGCAAAGAATTCTCAGTTTT
CGTTTGAGGAATTCTTTTATCTGATCTATATATGGAGGTCTTGTAGGAATTATATGACCAAAGTCATGTTCAATAACAACGGAGCAGCCATTCTC
AAACACAGAAGCAAGATGTCTACTAGCTTGGTTCTCTATCTGTCTATCTTTACCCTTGTCGTTGCCAAATATATGAAGTGAAGGAACATTGATTG
AACCTTGCTGGCAATTGTTCATATTAACAGCAAACCCCGAGCACAGAATCGCAAATCTGAATTCCATCTCTCCTTTTAGCTTCTGCTGATGTAGG
CAAACTAAAGCGGCCATTGCAGCTCCTTGTGAAAATCCCAATATCCCATCAAAAGGGCCTGTTTTCGAATATAAGTCTTTTACATATGCAATTGA
TTTGTCGAAACCTTCAGTTTGCTTCTGGTACTGAAGAGGATCAAATGGACTATCAGCTATCTTCCAGTCAGAATCGTTCTTTCCCTTGTGATCAG
GTGCAACTAACCATGAGAACTTTTTACTGCAATTCTCTGAGGGTGGACGGTTATTTTCCATTTCTGATGCAGAATCACAGTTTCTACGAATTTGA
TAAACGAATGACAATTCATGAGGTGCATCCACAAAGGCAAGCTCTGCAATGCTCTTGAGTTTCTTGGCCAGCGATGCAGTTCTGCCTTTGAAACC
AGAAGCATTCTGGCGGAAGCCATGAAAGCAAAGAATTCTCAGTTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539892] | SGN-U584509 | Tomato 200607 | Build 2 | 10 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340767 [Download][View] | Facility Assigned ID: TUS59O06_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.968 | Expected Error Rate: 0.0008 | Quality Trim Threshold: 14.5 |
Working
