EST details — SGN-E539997
| Search information |
| Request: 539997 | Match: SGN-E539997 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190301 | Clone name: TUS-60-A19 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C79363 [cLES-8-L1] | Trace: SGN-T99238 | EST: SGN-E288718 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190301 [TUS-60-A19] | Trace: SGN-T340875 | EST: SGN-E540000 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539997 | Length: 699 bp (868 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E539997 [] (trimmed)
AAAAATAATGCATACATTTTATTCCAGAAAAAATGTTACAACTTCATCAAACATGAAATTAAAGTAACTATTGGCTTAAAATACAACATATAATA
AGTAAATACAAAAATAAACGACGTTACTGACTACTTATAATTTAGGGGAATCGACAAAAGTCCAGGATGCTTCGATAAATGTGTGATACATAGTT
CACTCAACATGTGTATATAGGTTTCTAGGTAACCTAGGAGTAGGAACCACATGTAATGGAGTTTGCATATATGTTACTGTGCCAGGACTCTCCAT
CATATCAATATCTTCCACCTTAACACCATTAGGAAGTGACCAAACAAAATGGTGCAACAAATGTGCTAACATAGATGTCACCAAATTAATTGCAA
GGTTCATTCCTGGACATATACGTCTACCAGCACCAAATGGTAATAACTTATAGTCATGTCCCTTCATGTCAACATCCTCTTCAACAAATCTCTCT
GGCCTAAATTGCAATGGCTCTCTCCAAATATTTGGATCGCGACCTAACGCCCACACGTTAACATGTACAATTGAACCTTTAGGAATATTGTAACC
ACCTACTTTGACATTGTTACTTGCCATATGAGGCAACATTAGTGGAGTTGGAGGGTGCAATCTTAGTGATTCTTTGACAACATGTTGTAGATAGG
AGAGATTAAAAATATCTGGTTCATCTATGATTCG
AGTAAATACAAAAATAAACGACGTTACTGACTACTTATAATTTAGGGGAATCGACAAAAGTCCAGGATGCTTCGATAAATGTGTGATACATAGTT
CACTCAACATGTGTATATAGGTTTCTAGGTAACCTAGGAGTAGGAACCACATGTAATGGAGTTTGCATATATGTTACTGTGCCAGGACTCTCCAT
CATATCAATATCTTCCACCTTAACACCATTAGGAAGTGACCAAACAAAATGGTGCAACAAATGTGCTAACATAGATGTCACCAAATTAATTGCAA
GGTTCATTCCTGGACATATACGTCTACCAGCACCAAATGGTAATAACTTATAGTCATGTCCCTTCATGTCAACATCCTCTTCAACAAATCTCTCT
GGCCTAAATTGCAATGGCTCTCTCCAAATATTTGGATCGCGACCTAACGCCCACACGTTAACATGTACAATTGAACCTTTAGGAATATTGTAACC
ACCTACTTTGACATTGTTACTTGCCATATGAGGCAACATTAGTGGAGTTGGAGGGTGCAATCTTAGTGATTCTTTGACAACATGTTGTAGATAGG
AGAGATTAAAAATATCTGGTTCATCTATGATTCG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539997] | SGN-U576404 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340872 [Download][View] | Facility Assigned ID: TUS60A19_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.951 | Expected Error Rate: 0.0027 | Quality Trim Threshold: 14.5 |
Working
