EST details — SGN-E540087
| Search information |
| Request: 540087 | Match: SGN-E540087 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190352 | Clone name: TUS-60-C22 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C74569 [cLES-10-H6] | Trace: SGN-T99691 | EST: SGN-E285551 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190352 [TUS-60-C22] | Trace: SGN-T340960 | EST: SGN-E540085 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540087 | Length: 689 bp (884 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E540087 [] (trimmed)
AATGTTAGAGACAGATCAAAATTGGGCAAGGTGCAACGTGATGGGCTAGAAAATAAAACAGAACAACCGACAATGAGCTCTGATTCTTCTAGGCA
CTCGCGTGATTATCTTGATGCACAGAAGGTGTTTTCGAGATCACGCCATACAAGTGATGAAGAAGATGGTGCGAGAACATATCCTATACCTTCAT
CTGCCACCTTATCTGTTCTCCTTATTCCTTCATTAAAAGAGGCTGCTACCAGTGAAACAGATGGTTCACTCATGCAGGCGATGGTCAGTTCCTTT
ATGGATATGGAGCGTATGAAGGCTGGTTCTTGCGATCTGTTCATGACTAGGTTGCTTCAGCGACTAGCAAGTGCAAAGGATCCGTCTTTGAAAGA
TCTGCAAGACCTGGCTGGTCGCATCTTTTCAAAGGGAAAGATTGAAACAGAGAGTACAACTACCGAGTCTGATAGCAAAAAAAAGCAGCAGAGTA
AAGAGCTTAATTCAAATGCCAATTTGAGTCCACTGGCAAGGTTCTTGCTTTCAAGATGGCAAGGGCATGCTTCTCGAGATCAAAATTCCTAAACA
TTGAGGTTAGATTATTGTTTCAAAATTTTGCCTTCTCAAAATCTGTTTGTTCATGAATTATTTTGATTATGTGTACATATCATTTCGAGGACATC
TGTAATTTCGTCCTCTGATTCAAT
CTCGCGTGATTATCTTGATGCACAGAAGGTGTTTTCGAGATCACGCCATACAAGTGATGAAGAAGATGGTGCGAGAACATATCCTATACCTTCAT
CTGCCACCTTATCTGTTCTCCTTATTCCTTCATTAAAAGAGGCTGCTACCAGTGAAACAGATGGTTCACTCATGCAGGCGATGGTCAGTTCCTTT
ATGGATATGGAGCGTATGAAGGCTGGTTCTTGCGATCTGTTCATGACTAGGTTGCTTCAGCGACTAGCAAGTGCAAAGGATCCGTCTTTGAAAGA
TCTGCAAGACCTGGCTGGTCGCATCTTTTCAAAGGGAAAGATTGAAACAGAGAGTACAACTACCGAGTCTGATAGCAAAAAAAAGCAGCAGAGTA
AAGAGCTTAATTCAAATGCCAATTTGAGTCCACTGGCAAGGTTCTTGCTTTCAAGATGGCAAGGGCATGCTTCTCGAGATCAAAATTCCTAAACA
TTGAGGTTAGATTATTGTTTCAAAATTTTGCCTTCTCAAAATCTGTTTGTTCATGAATTATTTTGATTATGTGTACATATCATTTCGAGGACATC
TGTAATTTCGTCCTCTGATTCAAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540087] | SGN-U564653 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340962 [Download][View] | Facility Assigned ID: TUS60C22_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.972 | Expected Error Rate: 0.0100 | Quality Trim Threshold: 14.5 |
Working
