EST details — SGN-E540252
| Search information |
| Request: 540252 | Match: SGN-E540252 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190448 | Clone name: TUS-60-G22 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C75284 [cLES-13-I11] | Trace: SGN-T100359 | EST: SGN-E286046 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190448 [TUS-60-G22] | Trace: SGN-T341125 | EST: SGN-E540250 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540252 | Length: 773 bp (875 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E540252 [] (trimmed)
CACAAATTTTCCGGCGATGTCTACGGAAACAGCCGCCAATGATAACATACCTAACGCCGATGTTAGCCCAAGCAACGGTGTCGGAATTGATACGA
CGCCGTTTCTCACTAGCCAGAATTCCAGGAGCCGACGTTCGTTCCGTCGCCCTCCGAGCCTCAGAGGAGCTGCCGGATTTCTACGGCGTGCAAGT
AGCCGACGATTGATGCGTGAGCCGTCGATGCGAGTAAGAGAAGCCGCTGCTGAGCAAATCGAGGAGCGGCAAAGTGATTGGGCTTACTCAAAACC
TATAGTGATAATAGATCTTTTATGGAACTTAGCTTTTGTTATTGTATCGATTTCTGTGCTTGTACTGAGCCGAAATGAGTCTCCTTCTATGCCGT
TAAGGCTTTGGATTGTTGGATATGCTTCACAGAGTGTGCTTCATATGGTTTGTGTTTTCGTTGAGTATAGACGCCGACGGTTAAGGGAATCCACT
GAAAATTTGAGTAGTTCTGAGCAGAGAAGCGGGAGTGCTAGTTGGAATACCGAAGTTGGGAACTTGAGTTCGGAGAGTGACGGAGGGGAGTCTGG
TGATTATTCGCAGGAGAGGAATCAAAATGAGGATGAAACTAGTGTTGCCAAGCATCTGGAGTCTGCAAACACCATGTTTTCTTTCATTTGGTGGA
TAATCGGGTTCTACTGGGTATCTGCTGGTGGGCAGACTATGCCCCGTGATGCGCCTCAACTTTACTGGCTCTGTATCACATTTCTGGCGTTTGAT
GGGTTTTTTGTTG
CGCCGTTTCTCACTAGCCAGAATTCCAGGAGCCGACGTTCGTTCCGTCGCCCTCCGAGCCTCAGAGGAGCTGCCGGATTTCTACGGCGTGCAAGT
AGCCGACGATTGATGCGTGAGCCGTCGATGCGAGTAAGAGAAGCCGCTGCTGAGCAAATCGAGGAGCGGCAAAGTGATTGGGCTTACTCAAAACC
TATAGTGATAATAGATCTTTTATGGAACTTAGCTTTTGTTATTGTATCGATTTCTGTGCTTGTACTGAGCCGAAATGAGTCTCCTTCTATGCCGT
TAAGGCTTTGGATTGTTGGATATGCTTCACAGAGTGTGCTTCATATGGTTTGTGTTTTCGTTGAGTATAGACGCCGACGGTTAAGGGAATCCACT
GAAAATTTGAGTAGTTCTGAGCAGAGAAGCGGGAGTGCTAGTTGGAATACCGAAGTTGGGAACTTGAGTTCGGAGAGTGACGGAGGGGAGTCTGG
TGATTATTCGCAGGAGAGGAATCAAAATGAGGATGAAACTAGTGTTGCCAAGCATCTGGAGTCTGCAAACACCATGTTTTCTTTCATTTGGTGGA
TAATCGGGTTCTACTGGGTATCTGCTGGTGGGCAGACTATGCCCCGTGATGCGCCTCAACTTTACTGGCTCTGTATCACATTTCTGGCGTTTGAT
GGGTTTTTTGTTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540252] | SGN-U582128 | Tomato 200607 | Build 2 | 9 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T341127 [Download][View] | Facility Assigned ID: TUS60G22_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.990 | Expected Error Rate: 0.0050 | Quality Trim Threshold: 14.5 |
Working
