EST details — SGN-E540285
| Search information |
| Request: 540285 | Match: SGN-E540285 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190467 | Clone name: TUS-60-H17 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C75437 [cLES-14-B17] | Trace: SGN-T100649 | EST: SGN-E286828 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190467 [TUS-60-H17] | Trace: SGN-T341157 | EST: SGN-E540282 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540285 | Length: 741 bp (909 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E540285 [] (trimmed)
CAAGTATTGTCAGCTCCAATATGCAGCCACTTCATATGTTATCAGTGCTGAGGTACATGGAAGAAAGGGTTGGTCCTGAAGAGAAACAATTATGG
GCAAAATTTCACATTCAAAAAGGTTTTGGAGCTCTTGAAAAATTGCTGACAGGTTCTGCTGGAAAGTATGCTACAGGAGATGAAGTATATATGGC
TGACGTGTTTTTGGCACCTCAAATTGCAGTAGCTACTAAAAGGTTTGACATTGACATGTCTGAGTTTCCAACCTTGAGGAAAATATATGATTCTT
GTGAAGCATTACCAGAATTCCAAGCTTCCTTGCCAGAACGACAGCCTGATGCTTCCCCCTGAGCTTATATTTTTCTCGGTTTTCCACCCGGTGTC
CGGAGCTCACGTTAGAGCTCCGACTTAATCCGAGTCGCACTCTGCAGGATCCATTGACACTCCCAACAAGATTTTCTTCGTACTGGTTAAGGGTG
AAGTGTTAAATGCACAATTGCAAGAAACTATAAAGTATCTTTTTCTTTTTAATAGAAAATCTTATGAAAGAAAAAATATTGTTGACGAATATTGT
AATATGGAACTTTTCTATTATGTGACTGAGAAGCATTTGAGTCGACTGTCTTTTGGAAACAGTCTCTCTATCTCTACGAGGTAGAGGTAAGGTCT
GTATATATTTTATTGTCTTTGTATCTCCCTTGTAATATTCACTGGGTATATTAATATAATCGTTGTTTTGCTAAAA
GCAAAATTTCACATTCAAAAAGGTTTTGGAGCTCTTGAAAAATTGCTGACAGGTTCTGCTGGAAAGTATGCTACAGGAGATGAAGTATATATGGC
TGACGTGTTTTTGGCACCTCAAATTGCAGTAGCTACTAAAAGGTTTGACATTGACATGTCTGAGTTTCCAACCTTGAGGAAAATATATGATTCTT
GTGAAGCATTACCAGAATTCCAAGCTTCCTTGCCAGAACGACAGCCTGATGCTTCCCCCTGAGCTTATATTTTTCTCGGTTTTCCACCCGGTGTC
CGGAGCTCACGTTAGAGCTCCGACTTAATCCGAGTCGCACTCTGCAGGATCCATTGACACTCCCAACAAGATTTTCTTCGTACTGGTTAAGGGTG
AAGTGTTAAATGCACAATTGCAAGAAACTATAAAGTATCTTTTTCTTTTTAATAGAAAATCTTATGAAAGAAAAAATATTGTTGACGAATATTGT
AATATGGAACTTTTCTATTATGTGACTGAGAAGCATTTGAGTCGACTGTCTTTTGGAAACAGTCTCTCTATCTCTACGAGGTAGAGGTAAGGTCT
GTATATATTTTATTGTCTTTGTATCTCCCTTGTAATATTCACTGGGTATATTAATATAATCGTTGTTTTGCTAAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540285] | SGN-U563502 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T341160 [Download][View] | Facility Assigned ID: TUS60H17_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0035 | Quality Trim Threshold: 12.5 |
Working
