EST details — SGN-E540326
| Search information |
| Request: 540326 | Match: SGN-E540326 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190491 | Clone name: TUS-60-I17 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C75600 [cLES-14-L24] | Trace: SGN-T100719 | EST: SGN-E286898 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190491 [TUS-60-I17] | Trace: SGN-T341198 | EST: SGN-E540323 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540326 | Length: 833 bp (901 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E540326 [] (trimmed)
AGACAAATGAGGCTATAGCACATGCCAAGGCTGCCGGAGTTCCAATTGTGATTGCCATAAATAAGGTTGATAAGGATGGAGCAAATCCCGACCGA
GTCATGCAAGAACTTTCCACCATTGGTTTGATGCCGGAAGATTGGGGCGGCGACGTTCCAATGGTTAAGATCAGTGCTCTTAAAGGAGAGAATAT
AGATGATTTGCTGGAAATGGTCATGCTTGTTGCCGAGTTGCAAGAGTTGAAGGCTAATCCTCAAAGAAATGCCAAGGGGACTGTGATTGAGGCAG
GTCTCGATAAATCTAAAGGACCTGTAGCAACGTTCATTGTGCAGAATGGTACACTGAAAGGAGGAGATGTAGTAGTTTGTGGTGGAGCTTATGGA
AAGGTGCGGGCTCTGTTTGATGATAAGGGAAAACGTGTTGATGAAGCAGGACCCTCCATGCCTGTGCAGGTGATTGGACTGAACAATGTTCCATT
TGCTGGTGACGAGTTTGAGGTTGTTGAGTCCCTTGATATTGCTCGTGAAAAGGCTGAAGAACGAGCGGAGTCCTTGCGGAGTGAACGTTTATCGG
AAAAGGCCGGAGATGGGAAAATTACACTCTCTTCTTTTGCTTCTGCTGTTTCAGGAGGAACTGGTCTAGACTTGCACCAACTAAATATTATTCTG
AAAGTTGATCTTCAGGGATCCATTGAGGCCGTCAGACAAGCTCTTCAGGGTCTTTCACAGGATAATGTCACTTTGGAGTTCCTACTGCAAGCTAC
TGGTGATGTGAGCGCCAGTGATGTTGATCTTGCTGTAGCAAGTAAAGCTATATTTTTGGGCTTTATGTTAGGA
GTCATGCAAGAACTTTCCACCATTGGTTTGATGCCGGAAGATTGGGGCGGCGACGTTCCAATGGTTAAGATCAGTGCTCTTAAAGGAGAGAATAT
AGATGATTTGCTGGAAATGGTCATGCTTGTTGCCGAGTTGCAAGAGTTGAAGGCTAATCCTCAAAGAAATGCCAAGGGGACTGTGATTGAGGCAG
GTCTCGATAAATCTAAAGGACCTGTAGCAACGTTCATTGTGCAGAATGGTACACTGAAAGGAGGAGATGTAGTAGTTTGTGGTGGAGCTTATGGA
AAGGTGCGGGCTCTGTTTGATGATAAGGGAAAACGTGTTGATGAAGCAGGACCCTCCATGCCTGTGCAGGTGATTGGACTGAACAATGTTCCATT
TGCTGGTGACGAGTTTGAGGTTGTTGAGTCCCTTGATATTGCTCGTGAAAAGGCTGAAGAACGAGCGGAGTCCTTGCGGAGTGAACGTTTATCGG
AAAAGGCCGGAGATGGGAAAATTACACTCTCTTCTTTTGCTTCTGCTGTTTCAGGAGGAACTGGTCTAGACTTGCACCAACTAAATATTATTCTG
AAAGTTGATCTTCAGGGATCCATTGAGGCCGTCAGACAAGCTCTTCAGGGTCTTTCACAGGATAATGTCACTTTGGAGTTCCTACTGCAAGCTAC
TGGTGATGTGAGCGCCAGTGATGTTGATCTTGCTGTAGCAAGTAAAGCTATATTTTTGGGCTTTATGTTAGGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540326] | SGN-U569725 | Tomato 200607 | Build 2 | 15 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T341201 [Download][View] | Facility Assigned ID: TUS60I17_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.973 | Expected Error Rate: 0.0057 | Quality Trim Threshold: 14.5 |
Working
