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EST details — SGN-E540472

Search information 
Request: 540472Match: SGN-E540472
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C190576Clone name: TUS-60-M6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C76268 [cLES-17-H22] Trace: SGN-T101312 EST: SGN-E288870 Direction: 5' Facility: TIGR
Clone: SGN-C190576 [TUS-60-M6] Trace: SGN-T341344 EST: SGN-E540469 Direction: 3' Facility: INRA (MWG)
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E540472Length: 769 bp (837 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E540472 [] (trimmed) GAAAATGAGGTTCATTGCCCTTGTGTTCTTGGTTGGTGCTTTGGCCATTATAGCTGTTGATTGCAACTCTGAAGGAGATGCTCTTAATGCATTCA
AAACTAATGTGGCAGACCCAAACAATGTGCTTCAAAGTTGGGACCCAACTTTAGTCAACCCTTGCACATGGTTCCATGTCACTTGCAACTCCCAA
AATAGTGTTGTGAGAGTGGACCTAGGTGATGCTAATCTCTCTGGATCCTTGGTACCTCAATTAGGAATGCTAAGCAATCTCCAATACTTGCAAAT
CCAAAATAATTCAATTAGTGGAGAAATTCCAAGTGAATTAGGGAACCTCACAAAGTTAGTAAGCTTGGGGTTAGAAAATAACAAGCTCAGTGGTT
TTATTCCATCGTCTCTTGGCTATTTAAAATTACTACGATATATGAGATTGAATAGTAATAAATTATCAGGGGAGATTCCTATTTCTGTCTTGAAG
CTCGTCTTGTGGGGCAATTTGAAGCTTATGAATGTTTCAGACAATAAACTGGCAGGGACTGTCCATCATACTAATAAAACAGGATTTGCAATTAC
AACAATTGTTCAAGACGTCAAGGAAATATAGCATTCTCCAGACAAGTTGCAGTAATTCTATATATTAATTAATTAATTAATGTATCAAGTCAAAG
TCAAGATTTAGGATATTTGTGATTCTGAATAATTAATATTAAAATATGATTGAAATATATGTACGTAAGGAAAATAATAATTATTCAATAATTCT
ATAAAAAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E540472] SGN-U569924 Tomato 200607 Build 2 5 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T341347 [Download][View] Facility Assigned ID: TUS60M06_Q1
Submitter: Koni Sequencing Facility: INRA (MWG)
Funding Organization: INRA
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.947 Expected Error Rate: 0.0027 Quality Trim Threshold: 14.5