EST details — SGN-E540874
Search information |
Request: 540874 | Match: SGN-E540874 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C190810 | Clone name: TUS-61-F24 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C88842 [cLET-9-N14] | Trace: SGN-T104804 | EST: SGN-E289989 | Direction: 5' | Facility: TIGR |
Clone: SGN-C190810 [TUS-61-F24] | Trace: SGN-T341746 | EST: SGN-E540871 | Direction: 3' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E540874 | Length: 406 bp (882 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E540874 [] (trimmed)
GAAAGAGTATGCTCAAGTTATCTCATGTTCTTGCTTTCTTGCTTCTTGCATCACTTTTTCAATCACTGATGGCAAGAGATTTGAGTGATGGAATA
GAAGTGCTGGAAATTCTAGAAAATGAAATACAAGATGCATTTTGCTCAGGTAAGCAATCATGGCCTGAACTTGTTGGGAAGCCAGCAGAATATGC
TAAGAAAATAATTGAGAAGGAAAATCCCATAGCTCATGTTAGTGTTTTATTTCCTGGTATGCCAAGGCCAGGTAATTATGTTTGTGGTAGAGTTT
TTCTGGTTGTTGATTGGGAGGCCATTGTTAAAATTACTCCCAGAATGGGTTAATTAATTATTCTATGGGTTAAGAACATTATTATGTTATGAAAA
ATAAACAAAGTGGAGATATTAAGTAT
GAAGTGCTGGAAATTCTAGAAAATGAAATACAAGATGCATTTTGCTCAGGTAAGCAATCATGGCCTGAACTTGTTGGGAAGCCAGCAGAATATGC
TAAGAAAATAATTGAGAAGGAAAATCCCATAGCTCATGTTAGTGTTTTATTTCCTGGTATGCCAAGGCCAGGTAATTATGTTTGTGGTAGAGTTT
TTCTGGTTGTTGATTGGGAGGCCATTGTTAAAATTACTCCCAGAATGGGTTAATTAATTATTCTATGGGTTAAGAACATTATTATGTTATGAAAA
ATAAACAAAGTGGAGATATTAAGTAT
Unigenes |
Current Unigene builds | |||||
[SGN-E540874] | SGN-U584912 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T341749 [Download][View] | Facility Assigned ID: TUS61F24_Q1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.917 | Expected Error Rate: 0.0000 | Quality Trim Threshold: 12.5 |