EST details — SGN-E540964

Search information 
Request: 540964Match: SGN-E540964
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C190864Clone name: TUS-61-I6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C81007 [cLET-14-B20] Trace: SGN-T106118 EST: SGN-E294275 Direction: 5' Facility: TIGR
Clone: SGN-C81007 [cLET-14-B20] Trace: SGN-T106119 EST: SGN-E294276 Direction: 3' Facility: TIGR
Clone: SGN-C190864 [TUS-61-I6] Trace: SGN-T341842 EST: SGN-E540967 Direction: 5' Facility: INRA (MWG)
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Sequence 
Sequence Id: SGN-E540964Length: 581 bp (888 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E540964 [] (trimmed) TATAAACATTAGGGGCAATTAGTTTTTCTAGAACTTAGTATCCTCTCGGGCTTGTAAGCGATGAAACTGATGCACTGCACTTGACGAACATTGTC
GAATCCGATGATACGGACCCATGCCTGTGGGTAAGCCTTCTTTGCCTCCTGCACCTCAGCCAAGACCTGGGTTGCATCAGTGCACCCGAACATGG
GCAACTTCCACATGGTCCAGTATCTGCCATCGTAGTATCCTGGTGACTTATGGTTCTCACGGTACACAAATCCGTGCTCAGTCTCGAATTCCAAG
CAAGGAACCCATCCATTTTTCAATAGGTACTCAATTTCGCTGAGCAATTGCTCGTCGGACAAATCAGGAAGGTACGACAGAGTCTCGTACTTCTT
CATGTTAATTGGTGGCCACACCTGCATGCAACTGACTCTTCCACCGTTGCTAGCAATGGAGGTAATGTCAAGGTTTTGCTTCCTTGAAACAGGGA
AAGAAGCGGTGGACTTGAGTCCAGTGAAGGGTGCAACCATGCTAGCTTGTGCACCATTGCCGCGGGTGGCAACAGCTGCTGAGGACATTACTGAA
AGAGCCATTGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E540964] SGN-U580869 Tomato 200607 Build 2 1124 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T341839 [Download][View] Facility Assigned ID: TUS61I06_P1
Submitter: Koni Sequencing Facility: INRA (MWG)
Funding Organization: INRA
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.995 Expected Error Rate: 0.0218 Quality Trim Threshold: 12.5