EST details — SGN-E540964
| Search information |
| Request: 540964 | Match: SGN-E540964 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190864 | Clone name: TUS-61-I6 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C81007 [cLET-14-B20] | Trace: SGN-T106118 | EST: SGN-E294275 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C81007 [cLET-14-B20] | Trace: SGN-T106119 | EST: SGN-E294276 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C190864 [TUS-61-I6] | Trace: SGN-T341842 | EST: SGN-E540967 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E540964 | Length: 581 bp (888 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E540964 [] (trimmed)
TATAAACATTAGGGGCAATTAGTTTTTCTAGAACTTAGTATCCTCTCGGGCTTGTAAGCGATGAAACTGATGCACTGCACTTGACGAACATTGTC
GAATCCGATGATACGGACCCATGCCTGTGGGTAAGCCTTCTTTGCCTCCTGCACCTCAGCCAAGACCTGGGTTGCATCAGTGCACCCGAACATGG
GCAACTTCCACATGGTCCAGTATCTGCCATCGTAGTATCCTGGTGACTTATGGTTCTCACGGTACACAAATCCGTGCTCAGTCTCGAATTCCAAG
CAAGGAACCCATCCATTTTTCAATAGGTACTCAATTTCGCTGAGCAATTGCTCGTCGGACAAATCAGGAAGGTACGACAGAGTCTCGTACTTCTT
CATGTTAATTGGTGGCCACACCTGCATGCAACTGACTCTTCCACCGTTGCTAGCAATGGAGGTAATGTCAAGGTTTTGCTTCCTTGAAACAGGGA
AAGAAGCGGTGGACTTGAGTCCAGTGAAGGGTGCAACCATGCTAGCTTGTGCACCATTGCCGCGGGTGGCAACAGCTGCTGAGGACATTACTGAA
AGAGCCATTGC
GAATCCGATGATACGGACCCATGCCTGTGGGTAAGCCTTCTTTGCCTCCTGCACCTCAGCCAAGACCTGGGTTGCATCAGTGCACCCGAACATGG
GCAACTTCCACATGGTCCAGTATCTGCCATCGTAGTATCCTGGTGACTTATGGTTCTCACGGTACACAAATCCGTGCTCAGTCTCGAATTCCAAG
CAAGGAACCCATCCATTTTTCAATAGGTACTCAATTTCGCTGAGCAATTGCTCGTCGGACAAATCAGGAAGGTACGACAGAGTCTCGTACTTCTT
CATGTTAATTGGTGGCCACACCTGCATGCAACTGACTCTTCCACCGTTGCTAGCAATGGAGGTAATGTCAAGGTTTTGCTTCCTTGAAACAGGGA
AAGAAGCGGTGGACTTGAGTCCAGTGAAGGGTGCAACCATGCTAGCTTGTGCACCATTGCCGCGGGTGGCAACAGCTGCTGAGGACATTACTGAA
AGAGCCATTGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E540964] | SGN-U580869 | Tomato 200607 | Build 2 | 1124 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T341839 [Download][View] | Facility Assigned ID: TUS61I06_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.995 | Expected Error Rate: 0.0218 | Quality Trim Threshold: 12.5 |
Working
