EST details — SGN-E541012
Search information |
Request: 541012 | Match: SGN-E541012 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C190892 | Clone name: TUS-61-J10 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C81307 [cLET-15-J4] | Trace: SGN-T106572 | EST: SGN-E293621 | Direction: 5' | Facility: TIGR |
Clone: SGN-C190892 [TUS-61-J10] | Trace: SGN-T341890 | EST: SGN-E541015 | Direction: 5' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E541012 | Length: 811 bp (886 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E541012 [] (trimmed)
ACTTGCGAAGATCTTATTTATTATATATATACAATCTTTAAGCATCAAGAGGTCCGTCCTATCTTAACACATACACTGTAGAATAGCCTTTCTGA
GTTTCCATGTTTTGAGTGTCATATTACTATAAAATTGAATCTTCCCATACTATGCTTATACCTCTTCACACAGAGGCCAAACTGCGAATACTAGT
GAAAGGGGAGTAAGATCGGTTTTCTAAAACCCAAACTTAGGACCCAGTCTTCTTTTCCTGAGGCGCTCCGCAATAATAAAGGCAAGTTCAAGTGC
TTGAGAAGCATTGAGTCTTGGGTCACAATGTGTATGATAGCGCGAGCTCAGATCATTGTAAGTAATTGTCCGAGAACCTCCAACACACTCTGTTA
CATTCTGACCTGTCATCTCCAGATGCACACCACCAGGATAGCTACCTTCTTGATCGTGTACATCAAAGAATGCTCGAACCTCAGCCCGAATAGAG
TCGAATGAACGTGTTTTGAGTCCACAAGGGGCTTTAGTAGTATTTCCATGCATAGGATCACTGACCCAAGTGACAATTTGACCAGCTCCACGAAT
AGCCCTGATCAGATGGGGAAGCTTTACTCTCATGTTATCAGCTCCCATCCTGGCGATTACTGTAATCCTTCCTGGTCTATTTTGAGGGTTAAGAA
TGTCAATAAGCTTGACTAGTTCATTTGGATCCATTTTATGACTCACCTTGATTCCAAGTGGATTGGGCATTCCTCTCAGAAACTCAACATGAGCA
CCATCCAATTGCCTTGTTCGTTCCCAACCCAAATCATATGAGCGGAGCAGT
GTTTCCATGTTTTGAGTGTCATATTACTATAAAATTGAATCTTCCCATACTATGCTTATACCTCTTCACACAGAGGCCAAACTGCGAATACTAGT
GAAAGGGGAGTAAGATCGGTTTTCTAAAACCCAAACTTAGGACCCAGTCTTCTTTTCCTGAGGCGCTCCGCAATAATAAAGGCAAGTTCAAGTGC
TTGAGAAGCATTGAGTCTTGGGTCACAATGTGTATGATAGCGCGAGCTCAGATCATTGTAAGTAATTGTCCGAGAACCTCCAACACACTCTGTTA
CATTCTGACCTGTCATCTCCAGATGCACACCACCAGGATAGCTACCTTCTTGATCGTGTACATCAAAGAATGCTCGAACCTCAGCCCGAATAGAG
TCGAATGAACGTGTTTTGAGTCCACAAGGGGCTTTAGTAGTATTTCCATGCATAGGATCACTGACCCAAGTGACAATTTGACCAGCTCCACGAAT
AGCCCTGATCAGATGGGGAAGCTTTACTCTCATGTTATCAGCTCCCATCCTGGCGATTACTGTAATCCTTCCTGGTCTATTTTGAGGGTTAAGAA
TGTCAATAAGCTTGACTAGTTCATTTGGATCCATTTTATGACTCACCTTGATTCCAAGTGGATTGGGCATTCCTCTCAGAAACTCAACATGAGCA
CCATCCAATTGCCTTGTTCGTTCCCAACCCAAATCATATGAGCGGAGCAGT
Unigenes |
Current Unigene builds | |||||
[SGN-E541012] | SGN-U566919 | Tomato 200607 | Build 2 | 32 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T341887 [Download][View] | Facility Assigned ID: TUS61J10_P1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.977 | Expected Error Rate: 0.0037 | Quality Trim Threshold: 14.5 |