EST details — SGN-E541012
| Search information |
| Request: 541012 | Match: SGN-E541012 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190892 | Clone name: TUS-61-J10 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C81307 [cLET-15-J4] | Trace: SGN-T106572 | EST: SGN-E293621 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190892 [TUS-61-J10] | Trace: SGN-T341890 | EST: SGN-E541015 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E541012 | Length: 811 bp (886 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E541012 [] (trimmed)
ACTTGCGAAGATCTTATTTATTATATATATACAATCTTTAAGCATCAAGAGGTCCGTCCTATCTTAACACATACACTGTAGAATAGCCTTTCTGA
GTTTCCATGTTTTGAGTGTCATATTACTATAAAATTGAATCTTCCCATACTATGCTTATACCTCTTCACACAGAGGCCAAACTGCGAATACTAGT
GAAAGGGGAGTAAGATCGGTTTTCTAAAACCCAAACTTAGGACCCAGTCTTCTTTTCCTGAGGCGCTCCGCAATAATAAAGGCAAGTTCAAGTGC
TTGAGAAGCATTGAGTCTTGGGTCACAATGTGTATGATAGCGCGAGCTCAGATCATTGTAAGTAATTGTCCGAGAACCTCCAACACACTCTGTTA
CATTCTGACCTGTCATCTCCAGATGCACACCACCAGGATAGCTACCTTCTTGATCGTGTACATCAAAGAATGCTCGAACCTCAGCCCGAATAGAG
TCGAATGAACGTGTTTTGAGTCCACAAGGGGCTTTAGTAGTATTTCCATGCATAGGATCACTGACCCAAGTGACAATTTGACCAGCTCCACGAAT
AGCCCTGATCAGATGGGGAAGCTTTACTCTCATGTTATCAGCTCCCATCCTGGCGATTACTGTAATCCTTCCTGGTCTATTTTGAGGGTTAAGAA
TGTCAATAAGCTTGACTAGTTCATTTGGATCCATTTTATGACTCACCTTGATTCCAAGTGGATTGGGCATTCCTCTCAGAAACTCAACATGAGCA
CCATCCAATTGCCTTGTTCGTTCCCAACCCAAATCATATGAGCGGAGCAGT
GTTTCCATGTTTTGAGTGTCATATTACTATAAAATTGAATCTTCCCATACTATGCTTATACCTCTTCACACAGAGGCCAAACTGCGAATACTAGT
GAAAGGGGAGTAAGATCGGTTTTCTAAAACCCAAACTTAGGACCCAGTCTTCTTTTCCTGAGGCGCTCCGCAATAATAAAGGCAAGTTCAAGTGC
TTGAGAAGCATTGAGTCTTGGGTCACAATGTGTATGATAGCGCGAGCTCAGATCATTGTAAGTAATTGTCCGAGAACCTCCAACACACTCTGTTA
CATTCTGACCTGTCATCTCCAGATGCACACCACCAGGATAGCTACCTTCTTGATCGTGTACATCAAAGAATGCTCGAACCTCAGCCCGAATAGAG
TCGAATGAACGTGTTTTGAGTCCACAAGGGGCTTTAGTAGTATTTCCATGCATAGGATCACTGACCCAAGTGACAATTTGACCAGCTCCACGAAT
AGCCCTGATCAGATGGGGAAGCTTTACTCTCATGTTATCAGCTCCCATCCTGGCGATTACTGTAATCCTTCCTGGTCTATTTTGAGGGTTAAGAA
TGTCAATAAGCTTGACTAGTTCATTTGGATCCATTTTATGACTCACCTTGATTCCAAGTGGATTGGGCATTCCTCTCAGAAACTCAACATGAGCA
CCATCCAATTGCCTTGTTCGTTCCCAACCCAAATCATATGAGCGGAGCAGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E541012] | SGN-U566919 | Tomato 200607 | Build 2 | 32 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T341887 [Download][View] | Facility Assigned ID: TUS61J10_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.977 | Expected Error Rate: 0.0037 | Quality Trim Threshold: 14.5 |
Working
