EST details — SGN-E541470
| Search information |
| Request: 541470 | Match: SGN-E541470 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C191157 | Clone name: TUS-62-E11 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C85102 [cLET-38-A6] | Trace: SGN-T109955 | EST: SGN-E297876 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C191157 [TUS-62-E11] | Trace: SGN-T342342 | EST: SGN-E541467 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E541470 | Length: 812 bp (871 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E541470 [] (trimmed)
GAAAAGGCTGAAGCTGTCTTCTCTGAGATGCGGAAGAATGGCCTTCCTTCAAGTGCTCTTGTATATAATGCTTATATTGATGGGTTAATGAAGGG
AAGAAATTCGCAAAAAGCATTGGCAATCTTTGATAGGATGAAGCGTGAAAGCTGCCAACCATCTACTGATACTTATACAATGCTGATCAACTTAT
ATGGGAAGGAAAATAAGTCCTACATGGCGCTAAAGATGTTCAATGAGATGAAAGCTCAGAAATGTAAACCTAATATCTGTACCTACACAGCTCTT
GTAAATGCATTTGCGAGAAGTGGCCTATGTGAAAAGGCTGAAGAAGTCTTTGAAGAGCTACAAGAAGCTGGGTTTGAGCCTGATGTTTACACCTA
TAATGCCTTGATGGAAGCTTACAGTCGTGCAGGCTACCCTCAGGGTGCTGCAGAGATCTTTTCTCTCATGCAGCATATGGGCTGTGAACCAGACA
CAGCTTCATACAATATCATGGTGGATGCCTATGGAAGAGCTGGTCTTCATGAAGATGCACAAACTGTGTTTGATGAGATGACGCGGCTGGGGATA
GCTCCTACGATGAAATCCTACATGTTACTCATATCAGCCTACTCTAGAAACAGTAACGTGTCAAAATGTGAAGAAATCGTGAATCAGATGCAGAA
ATCAGGAGTGAAACTAGATACCTTTCTTCTTACAGCATGCTCAACTTGTATGGTCGTCTTGGCCAGTTTGCTAAAATGGAAGAAACTCTGACTGT
CATAGAAGCTGGACCATACGTAGCCGATATCAGCACCCTACATATCTTGATC
AAGAAATTCGCAAAAAGCATTGGCAATCTTTGATAGGATGAAGCGTGAAAGCTGCCAACCATCTACTGATACTTATACAATGCTGATCAACTTAT
ATGGGAAGGAAAATAAGTCCTACATGGCGCTAAAGATGTTCAATGAGATGAAAGCTCAGAAATGTAAACCTAATATCTGTACCTACACAGCTCTT
GTAAATGCATTTGCGAGAAGTGGCCTATGTGAAAAGGCTGAAGAAGTCTTTGAAGAGCTACAAGAAGCTGGGTTTGAGCCTGATGTTTACACCTA
TAATGCCTTGATGGAAGCTTACAGTCGTGCAGGCTACCCTCAGGGTGCTGCAGAGATCTTTTCTCTCATGCAGCATATGGGCTGTGAACCAGACA
CAGCTTCATACAATATCATGGTGGATGCCTATGGAAGAGCTGGTCTTCATGAAGATGCACAAACTGTGTTTGATGAGATGACGCGGCTGGGGATA
GCTCCTACGATGAAATCCTACATGTTACTCATATCAGCCTACTCTAGAAACAGTAACGTGTCAAAATGTGAAGAAATCGTGAATCAGATGCAGAA
ATCAGGAGTGAAACTAGATACCTTTCTTCTTACAGCATGCTCAACTTGTATGGTCGTCTTGGCCAGTTTGCTAAAATGGAAGAAACTCTGACTGT
CATAGAAGCTGGACCATACGTAGCCGATATCAGCACCCTACATATCTTGATC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E541470] | SGN-U584496 | Tomato 200607 | Build 2 | 6 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T342345 [Download][View] | Facility Assigned ID: TUS62E11_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0036 | Quality Trim Threshold: 14.5 |
Working
