EST details — SGN-E541665
| Search information |
| Request: 541665 | Match: SGN-E541665 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C191272 | Clone name: TUS-62-J6 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C86604 [cLET-43-K23] | Trace: SGN-T110968 | EST: SGN-E299227 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C191272 [TUS-62-J6] | Trace: SGN-T342543 | EST: SGN-E541668 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E541665 | Length: 842 bp (880 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E541665 [] (trimmed)
GAGCTGAATATATTTCTGCACTTATATTTTGGGGAATTTTCAAAAAATATACATCACTATTTGAGCAAAACCAAGAAGTAGCATAAACATTACAA
AGGAAAGTGCCTGTTTAGCATAAGAACCACCCAAGTCAATATTTGATATACATACTGAGAAAAGGACACATCTCACAAACAAAAACCAATTACAA
AAGTTGCTCTATCCTTTCTCTCTTTCCCCCCTTTTCTATGGAGATCGCCACGATAAGTTTAGATATTGCAGCCTAAATAGCCTCACCAGGAATGA
GTTGCCTTTGTCACACCAAAAGTCACAGCAATTAAAGCAAGCATGGCCCCTAATGTGCATGCTATAAGGCCAGCCTTCTCTCTATAATCGATCCG
TACACACAAAAGAAGAAAAGCTCCAACATACCAAGGTATGGTACCAAGAAAGAAACCAGAGATGAACAAGACCCAGCCGATCCCCACACCACAGC
AAGGAAGACGGTGCTCCCTCATAGGTCTACCTTCAGCAACAGCATAACCGTGAACAGTTTGATAACCCTGAGGATAGTATTGAGGAGGAGCGCCG
GCGACACCAGGAGGAGGAACGGGCTGAGGAAAACCGAACACCGGGTGAGACTGTGGAGGAGGAGGCGGATGATTTGCTACTCCTTGAAATGTACC
GTAGTAATAGTTTGCCGGCAAAGGTTCGCCGGTGGCCGAAGAGGCCATGTTCTTCCCCTCTTCTTTGCTCATACTTTCCCCCGACAGAGATCTAG
TAACAGTTTAGCCTTACCGCGATTGATTCGAATAGTCGTATCGCTTTTGACGCCGATTGTCAGAATCAGATCGGCGCGGCTA
AGGAAAGTGCCTGTTTAGCATAAGAACCACCCAAGTCAATATTTGATATACATACTGAGAAAAGGACACATCTCACAAACAAAAACCAATTACAA
AAGTTGCTCTATCCTTTCTCTCTTTCCCCCCTTTTCTATGGAGATCGCCACGATAAGTTTAGATATTGCAGCCTAAATAGCCTCACCAGGAATGA
GTTGCCTTTGTCACACCAAAAGTCACAGCAATTAAAGCAAGCATGGCCCCTAATGTGCATGCTATAAGGCCAGCCTTCTCTCTATAATCGATCCG
TACACACAAAAGAAGAAAAGCTCCAACATACCAAGGTATGGTACCAAGAAAGAAACCAGAGATGAACAAGACCCAGCCGATCCCCACACCACAGC
AAGGAAGACGGTGCTCCCTCATAGGTCTACCTTCAGCAACAGCATAACCGTGAACAGTTTGATAACCCTGAGGATAGTATTGAGGAGGAGCGCCG
GCGACACCAGGAGGAGGAACGGGCTGAGGAAAACCGAACACCGGGTGAGACTGTGGAGGAGGAGGCGGATGATTTGCTACTCCTTGAAATGTACC
GTAGTAATAGTTTGCCGGCAAAGGTTCGCCGGTGGCCGAAGAGGCCATGTTCTTCCCCTCTTCTTTGCTCATACTTTCCCCCGACAGAGATCTAG
TAACAGTTTAGCCTTACCGCGATTGATTCGAATAGTCGTATCGCTTTTGACGCCGATTGTCAGAATCAGATCGGCGCGGCTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E541665] | SGN-U567971 | Tomato 200607 | Build 2 | 16 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T342540 [Download][View] | Facility Assigned ID: TUS62J06_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.975 | Expected Error Rate: 0.0020 | Quality Trim Threshold: 20.5 |
Working
