EST details — SGN-E542381
| Search information |
| Request: 542381 | Match: SGN-E542381 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C191689 | Clone name: TUS-63-K15 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C89686 [cLEW-19-B9] | Trace: SGN-T113672 | EST: SGN-E302248 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C191689 [TUS-63-K15] | Trace: SGN-T343259 | EST: SGN-E542384 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E542381 | Length: 790 bp (888 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E542381 [] (trimmed)
AGAGAAAAAAAGGTTCTCATTTATGTTGAGCTGATAAGTTTCTATTGAAAGATATTACATCAAGATAAAAAAAATTAAATAAAAATAACAGTACT
TGTATGTCCAAGAAACATGCAAAAGTTGGCAATGGAGATAAATTGCATTCTTAAAATGATCAAGAATTGAAAGCTGAATGACTAAAAACTGCATT
TTTCATTCAGGTGTTTGTGCATTAGAGTCCTTGGATCTGCTGTCCTCCGAGGAAGGTCTCGTTTCACCTTGTGGTTGTCGAATTTCTTCAATCAT
TCTAACCACTTCTCCCATAGCTGGTCTCATATCAGGCACCTTAGCTACACAAGCTAGTCCAATCTGAAGCATCTGCACCATCTCTTCTTCAATGT
TCTGGTACTTCAACAGCTCTACGTCGAAAACCTCAGCAGTCCATTCCTCTCTAACAACGGACCGGACCCACCTAGGCAAATCAACTACCTCATCC
TGCCCTGGTAATGGGAGAGGGGATTTACCTGTTAGCATCTCAAGGAGCAGTACTCCGAAGCTATAAACATCGGATTTTTGTGTCCCTTTCCGTGT
TTCAATAACTTCTGGTGCGCGGTAACCAGCACATCTATATTTGAATGATATGTAGTTCATCATAGGTGTTAAGCCAAAATCAGAAATGCATCCAT
CTAGGTCTCTTGTGAGGAGTACATTGGAGGACTTGATGTTTCCATGAGTGAATTTCACACCACCTTCAGTATGGATGTGGGCAATTCCTTTTGCT
GCTCCCTGAGATATCTTCAATCTTGAATCC
TGTATGTCCAAGAAACATGCAAAAGTTGGCAATGGAGATAAATTGCATTCTTAAAATGATCAAGAATTGAAAGCTGAATGACTAAAAACTGCATT
TTTCATTCAGGTGTTTGTGCATTAGAGTCCTTGGATCTGCTGTCCTCCGAGGAAGGTCTCGTTTCACCTTGTGGTTGTCGAATTTCTTCAATCAT
TCTAACCACTTCTCCCATAGCTGGTCTCATATCAGGCACCTTAGCTACACAAGCTAGTCCAATCTGAAGCATCTGCACCATCTCTTCTTCAATGT
TCTGGTACTTCAACAGCTCTACGTCGAAAACCTCAGCAGTCCATTCCTCTCTAACAACGGACCGGACCCACCTAGGCAAATCAACTACCTCATCC
TGCCCTGGTAATGGGAGAGGGGATTTACCTGTTAGCATCTCAAGGAGCAGTACTCCGAAGCTATAAACATCGGATTTTTGTGTCCCTTTCCGTGT
TTCAATAACTTCTGGTGCGCGGTAACCAGCACATCTATATTTGAATGATATGTAGTTCATCATAGGTGTTAAGCCAAAATCAGAAATGCATCCAT
CTAGGTCTCTTGTGAGGAGTACATTGGAGGACTTGATGTTTCCATGAGTGAATTTCACACCACCTTCAGTATGGATGTGGGCAATTCCTTTTGCT
GCTCCCTGAGATATCTTCAATCTTGAATCC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E542381] | SGN-U563474 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T343256 [Download][View] | Facility Assigned ID: TUS63K15_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.972 | Expected Error Rate: 0.0066 | Quality Trim Threshold: 14.5 |
Working
