EST details — SGN-E543031
| Search information |
| Request: 543031 | Match: SGN-E543031 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C192064 | Clone name: TUS-64-K6 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C93912 [cLEX-1-E21] | Trace: SGN-T115108 | EST: SGN-E302525 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C93912 [cLEX-1-E21] | Trace: SGN-T115109 | EST: SGN-E302526 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C192064 [TUS-64-K6] | Trace: SGN-T343907 | EST: SGN-E543032 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E543031 | Length: 816 bp (888 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E543031 [] (trimmed)
GAAAATTCAGTTCCATTCAAATTTTTATTGAGTAGAATTTACAACAACCAAAATTTATACATTATTTGAAAAATATACTATGCATCACAGCGACT
CAATTTGAATTTGCACCAGTTTCAAAACTTCTCTGAATCTCACTGCTATATTGGTTTCTATCTGCACTAGTCTTCATGTCTGTCGAATTCATTGA
GCCGAATGGATTTGGTGGCATTATGGGAATGCCTTCTCCTACTAGCATTTGAATCACAACTTTCATGGATGGCCTATCTGCTGGAAACCATTGAA
TGCACCAAAGTCCTACAATTGCCAGTTTCTTGATTATGCTGTTCTCATCGTCATGCTCGATTTGGATTGCTATTTCTTCACCTTTTTCAAGTTGT
TTGTACATCCACTCCGGGTAGTAAATCTGACTACTACTGTTCTCCGCCTTTGCAGCATCATCAAATTTGTTCCTTCCACCAATCATATCAAGCAA
CAACATGCCAAAACTATATATATCTGCTCTATAGGACACATCTCCGTAGTTCCTGGAGAACACTTCAGGGGCGATATAGCCAATAGTGCCTCGAG
CAGCAGTCATTGACACAGCACTTTGTTCCTTGGCACACAACTTTGCAAGACCAAAATCAGCAACTTTTGGATTGAAATCTTGGTCTAACAAGATA
TTATGAGGTTTGATATCGAAATGAACAATTCGTTGATTGCAACCTTGATGAAGATACTCGAGTCCCTTGGCAATTCCTACAGATATTTGTAACAT
CTTCTCCCAACCTAGTGATGATGACCCTCTTCCATTCCCGGATGATATGATCTTTT
CAATTTGAATTTGCACCAGTTTCAAAACTTCTCTGAATCTCACTGCTATATTGGTTTCTATCTGCACTAGTCTTCATGTCTGTCGAATTCATTGA
GCCGAATGGATTTGGTGGCATTATGGGAATGCCTTCTCCTACTAGCATTTGAATCACAACTTTCATGGATGGCCTATCTGCTGGAAACCATTGAA
TGCACCAAAGTCCTACAATTGCCAGTTTCTTGATTATGCTGTTCTCATCGTCATGCTCGATTTGGATTGCTATTTCTTCACCTTTTTCAAGTTGT
TTGTACATCCACTCCGGGTAGTAAATCTGACTACTACTGTTCTCCGCCTTTGCAGCATCATCAAATTTGTTCCTTCCACCAATCATATCAAGCAA
CAACATGCCAAAACTATATATATCTGCTCTATAGGACACATCTCCGTAGTTCCTGGAGAACACTTCAGGGGCGATATAGCCAATAGTGCCTCGAG
CAGCAGTCATTGACACAGCACTTTGTTCCTTGGCACACAACTTTGCAAGACCAAAATCAGCAACTTTTGGATTGAAATCTTGGTCTAACAAGATA
TTATGAGGTTTGATATCGAAATGAACAATTCGTTGATTGCAACCTTGATGAAGATACTCGAGTCCCTTGGCAATTCCTACAGATATTTGTAACAT
CTTCTCCCAACCTAGTGATGATGACCCTCTTCCATTCCCGGATGATATGATCTTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E543031] | SGN-U573943 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T343906 [Download][View] | Facility Assigned ID: TUS64K06_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.953 | Expected Error Rate: 0.0048 | Quality Trim Threshold: 20.5 |
Working
