EST details — SGN-E543401
| Search information |
| Request: 543401 | Match: SGN-E543401 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C192279 | Clone name: TUS-65-D5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C94979 [cLEX-6-K13] | Trace: SGN-T116066 | EST: SGN-E304048 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C94979 [cLEX-6-K13] | Trace: SGN-T116204 | EST: SGN-E304186 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C192279 [TUS-65-D5] | Trace: SGN-T349747 | EST: SGN-E548872 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E543401 | Length: 788 bp (872 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E543401 [] (trimmed)
GGTTAAAGAAAGGAATATCGAGGCAATTCTCAACAGAGTTGTTTAGGAAGAGTGGAAAATTCAGTTTCAAGAGGCAGAGTTCATTGGATCCAAGG
AGGAACAATTTGCGGTTTAGTTTTGGGAGGCAATCATCGCTTGATCCGCTTCGAAGGAGCCCTTCGATAGAAAATGCTGAGAGAACTGTGCCAGA
GAATCTTGATTCGACGATGCAGCTGTTATTCATGGCGTGTAAAGGGGACGTGAAGGGAGTTCAGGACTTGTTGGATGAAGGTATTGATGTGAATA
GCATTGATTTGGATGGAAGGACTGCTCTTCATATTGCTGCCTGTGAAGGTCACGTGGAAGTTGCCAAGCTATTGTTGAGTAGGAAGGCTAATATG
AATGCTCGTGATCGGTGGGGTAGTACGGCAGCAGCTGATGCCAAACATTATGGTAATGCTGAAGTTTACGAAATGTTGAAGGCCCGTGGAGCCAA
AGTCCCGAAAGTCGGAAAGACGCCAATGGCTGTAGCAAATCCACGAGAAGTTCCAGAATATGAACTAAACCCTCTGGAGCTTCAAATCCGCAAAA
GTGATGGAATCTCAAAGGGTTCATATCAAGTTGCCAAATGGAATGGAACGAAAGTTTCCGTAAAAATACTTGACAAGGATAGCTATAAAGATCCT
GAAAGCATAAATGCTTTCAAACATGAATTAACTTTGCTAGAAAAAGTGCGGCATCCAAATGTAGTTCAGTTTGTTGGAGCAGTTACACAAATATA
CCAATGATGATAGTGTCAGAGTATCATC
AGGAACAATTTGCGGTTTAGTTTTGGGAGGCAATCATCGCTTGATCCGCTTCGAAGGAGCCCTTCGATAGAAAATGCTGAGAGAACTGTGCCAGA
GAATCTTGATTCGACGATGCAGCTGTTATTCATGGCGTGTAAAGGGGACGTGAAGGGAGTTCAGGACTTGTTGGATGAAGGTATTGATGTGAATA
GCATTGATTTGGATGGAAGGACTGCTCTTCATATTGCTGCCTGTGAAGGTCACGTGGAAGTTGCCAAGCTATTGTTGAGTAGGAAGGCTAATATG
AATGCTCGTGATCGGTGGGGTAGTACGGCAGCAGCTGATGCCAAACATTATGGTAATGCTGAAGTTTACGAAATGTTGAAGGCCCGTGGAGCCAA
AGTCCCGAAAGTCGGAAAGACGCCAATGGCTGTAGCAAATCCACGAGAAGTTCCAGAATATGAACTAAACCCTCTGGAGCTTCAAATCCGCAAAA
GTGATGGAATCTCAAAGGGTTCATATCAAGTTGCCAAATGGAATGGAACGAAAGTTTCCGTAAAAATACTTGACAAGGATAGCTATAAAGATCCT
GAAAGCATAAATGCTTTCAAACATGAATTAACTTTGCTAGAAAAAGTGCGGCATCCAAATGTAGTTCAGTTTGTTGGAGCAGTTACACAAATATA
CCAATGATGATAGTGTCAGAGTATCATC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E543401] | SGN-U569625 | Tomato 200607 | Build 2 | 8 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T344276 [Download][View] | Facility Assigned ID: TUS65D05_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0019 | Quality Trim Threshold: 14.5 |
Working
