EST details — SGN-E543780
Search information |
Request: 543780 | Match: SGN-E543780 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C192500 | Clone name: TUS-65-M10 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C93006 [cLEX-13-G23] | Trace: SGN-T117549 | EST: SGN-E306456 | Direction: 5' | Facility: TIGR |
Clone: SGN-C192500 [TUS-65-M10] | Trace: SGN-T344656 | EST: SGN-E543781 | Direction: 5' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E543780 | Length: 814 bp (854 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E543780 [] (trimmed)
GATTTAATATTTGTTGAGATTGTCAAAGAGAAGATCAAGCAAGACGTTCTCAACTAACATCAATTTCAACAGACAATAAGACATTTACATATTTG
TTTACTCTAAAGATTGGATATTCTAGCATTGTGTTCCAATTCTTTGGCACATAAACATTTCAAATTTACCAACGACTAATTCACAAGTACATATG
CATAACTATAATTAGGTTGTGAGTGACAATCCTGAAGAGTGAACAAGCTCCGCTACTAATATCATGCAATATTCTCCCAATGAAGAAAACCACCG
TGCCCTCTAGCATTTGAGAAGCTGTAATCAGGTCCAGAAGCTTCATAACCCCCAAAAACTGGATCTTCTGCCAACAGAAGGGGTGTGTCTAGGTC
AATGAATTTGAAACATCCAAGGCCAGCGGCTAGATGACCAGCAAAGCCCATGGCAAGCCTGGTTTCAACCATACCACCGATCATCAGATTTAAGC
CCGAGGACCTCACCAAGTCAATAATTTCCAGAGCCCCAAGCACCCCAACTTTGGCAAGCTTAATGTTAATGACATCAGCAAGACTTTCTTGCACT
ATCTTTTTAGCATCAACCAAACTTCGACAACTTTCATCGGCAGCAACAGATACCCCATATTTGTCCTTTGCAATCTGACTGACATGACCAAGACC
TTTCCAATCATCTCTATGAACAGGTTGTTCAAATAGCACCGGAGTGACATCCATTTCATGCAACTTTTCCAGGACTTTAATAGCTTCATTTGCCG
TGTAACCTTCATTAGCATCTAAGATAAACAAGCATCAGGATGTGCTGCACGTAT
TTTACTCTAAAGATTGGATATTCTAGCATTGTGTTCCAATTCTTTGGCACATAAACATTTCAAATTTACCAACGACTAATTCACAAGTACATATG
CATAACTATAATTAGGTTGTGAGTGACAATCCTGAAGAGTGAACAAGCTCCGCTACTAATATCATGCAATATTCTCCCAATGAAGAAAACCACCG
TGCCCTCTAGCATTTGAGAAGCTGTAATCAGGTCCAGAAGCTTCATAACCCCCAAAAACTGGATCTTCTGCCAACAGAAGGGGTGTGTCTAGGTC
AATGAATTTGAAACATCCAAGGCCAGCGGCTAGATGACCAGCAAAGCCCATGGCAAGCCTGGTTTCAACCATACCACCGATCATCAGATTTAAGC
CCGAGGACCTCACCAAGTCAATAATTTCCAGAGCCCCAAGCACCCCAACTTTGGCAAGCTTAATGTTAATGACATCAGCAAGACTTTCTTGCACT
ATCTTTTTAGCATCAACCAAACTTCGACAACTTTCATCGGCAGCAACAGATACCCCATATTTGTCCTTTGCAATCTGACTGACATGACCAAGACC
TTTCCAATCATCTCTATGAACAGGTTGTTCAAATAGCACCGGAGTGACATCCATTTCATGCAACTTTTCCAGGACTTTAATAGCTTCATTTGCCG
TGTAACCTTCATTAGCATCTAAGATAAACAAGCATCAGGATGTGCTGCACGTAT
Unigenes |
Current Unigene builds | |||||
[SGN-E543780] | SGN-U582187 | Tomato 200607 | Build 2 | 20 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T344655 [Download][View] | Facility Assigned ID: TUS65M10_P1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.968 | Expected Error Rate: 0.0033 | Quality Trim Threshold: 14.5 |