EST details — SGN-E543980
Search information |
Request: 543980 | Match: SGN-E543980 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C192616 | Clone name: TUS-66-B6 |
| ||
Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C93765 [cLEX-15-K4] | Trace: SGN-T117756 | EST: SGN-E305270 | Direction: 5' | Facility: TIGR |
Clone: SGN-C192616 [TUS-66-B6] | Trace: SGN-T344854 | EST: SGN-E543979 | Direction: 3' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E543980 | Length: 742 bp (855 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E543980 [] (trimmed)
GCATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTT
TCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTG
GTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTGGTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATT
GGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCA
TTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGGCTTTGCTTGGAAAGAAATTG
AACTCAACTACAGGAATTCCAAATTGAAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGT
GCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAA
CAATTGTGTCATTGTATTTATTCATTATTGTGGACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCA
TCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTG
GTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTGGTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATT
GGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCA
TTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGGCTTTGCTTGGAAAGAAATTG
AACTCAACTACAGGAATTCCAAATTGAAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGT
GCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAA
CAATTGTGTCATTGTATTTATTCATTATTGTGGACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCA
Unigenes |
Current Unigene builds | |||||
[SGN-E543980] | SGN-U565295 | Tomato 200607 | Build 2 | 9 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T344855 [Download][View] | Facility Assigned ID: TUS66B06_Q1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.958 | Expected Error Rate: 0.0049 | Quality Trim Threshold: 14.5 |