EST details — SGN-E543980
| Search information |
| Request: 543980 | Match: SGN-E543980 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C192616 | Clone name: TUS-66-B6 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C93765 [cLEX-15-K4] | Trace: SGN-T117756 | EST: SGN-E305270 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C192616 [TUS-66-B6] | Trace: SGN-T344854 | EST: SGN-E543979 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E543980 | Length: 742 bp (855 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E543980 [] (trimmed)
GCATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTT
TCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTG
GTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTGGTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATT
GGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCA
TTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGGCTTTGCTTGGAAAGAAATTG
AACTCAACTACAGGAATTCCAAATTGAAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGT
GCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAA
CAATTGTGTCATTGTATTTATTCATTATTGTGGACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCA
TCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTG
GTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTGGTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATT
GGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCA
TTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGGCTTTGCTTGGAAAGAAATTG
AACTCAACTACAGGAATTCCAAATTGAAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGT
GCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAA
CAATTGTGTCATTGTATTTATTCATTATTGTGGACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E543980] | SGN-U565295 | Tomato 200607 | Build 2 | 9 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T344855 [Download][View] | Facility Assigned ID: TUS66B06_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.958 | Expected Error Rate: 0.0049 | Quality Trim Threshold: 14.5 |
Working
