EST details — SGN-E546866
Search information |
Request: 546866 | Match: SGN-E546866 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C194296 | Clone name: TUS-70-H6 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C106871 [cLPP-3-I20] | Trace: SGN-T175441 | EST: SGN-E363610 | Direction: 5' | Facility: TIGR |
Clone: SGN-C194296 [TUS-70-H6] | Trace: SGN-T347740 | EST: SGN-E546865 | Direction: 3' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E546866 | Length: 748 bp (852 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E546866 [] (trimmed)
GATTTTCTGAGAAATAATTTCTAATGGCCGCTCCACCCGCTAGAGCTCGAGCTGATTACGATTACCTCATCAAACTCCTTTTGATCGGCGACAGC
GGTGTGGGTAAGAGTTGCCTTCTTTTACGTTTCTCAGATGGCTCCTTTACGACCAGTTTTATCACAACTATTGGTATTGACTTCAAGATAAGGAC
CATAGAGCTTGACAGTAAACGCATCAAATTGCAAATCTGGGATACTGCTGGTCAGGAGCGGTTCCGAACAATTACAACTGCTTACTACCGTGGAG
CCATGGGTATATTGCTGGTGTACGATGTAACTGATGAGTCATCTTTTAACAACATCAGGAACTGGATAAGAAACATTGAACAGCATGCTTCCGAC
AATGTCAACAAAATACTGGTCGGCAACAAGGCTGACATGGATGAAAGCAAAAGGGCTGTTCCTACATCCAAGGGTCAAGCACTTGCTGATGAATA
TGGCATTAAATTCTTTGAAACTAGTGCCAAGACAAATATGAATGTTGAGGAGGTTTTCTTTTCCATAGCTCGGGATATAAAACAAAGGCTTGCCG
AATCTGACTCAAAGGCTGAGCCTCAGACCATCAGGATAAATCAACCGGACCAGGGAGCAGGATCTTCACAAGGCGCTCAAAATCAGCTTGCTGTG
GTTCTTAAATATCGATTAACAGCAATGAAGCCAGGATGATGGGGAAATCATCCTTAAAATGCCCTTTTAGTGGAAGGGCTGAA
GGTGTGGGTAAGAGTTGCCTTCTTTTACGTTTCTCAGATGGCTCCTTTACGACCAGTTTTATCACAACTATTGGTATTGACTTCAAGATAAGGAC
CATAGAGCTTGACAGTAAACGCATCAAATTGCAAATCTGGGATACTGCTGGTCAGGAGCGGTTCCGAACAATTACAACTGCTTACTACCGTGGAG
CCATGGGTATATTGCTGGTGTACGATGTAACTGATGAGTCATCTTTTAACAACATCAGGAACTGGATAAGAAACATTGAACAGCATGCTTCCGAC
AATGTCAACAAAATACTGGTCGGCAACAAGGCTGACATGGATGAAAGCAAAAGGGCTGTTCCTACATCCAAGGGTCAAGCACTTGCTGATGAATA
TGGCATTAAATTCTTTGAAACTAGTGCCAAGACAAATATGAATGTTGAGGAGGTTTTCTTTTCCATAGCTCGGGATATAAAACAAAGGCTTGCCG
AATCTGACTCAAAGGCTGAGCCTCAGACCATCAGGATAAATCAACCGGACCAGGGAGCAGGATCTTCACAAGGCGCTCAAAATCAGCTTGCTGTG
GTTCTTAAATATCGATTAACAGCAATGAAGCCAGGATGATGGGGAAATCATCCTTAAAATGCCCTTTTAGTGGAAGGGCTGAA
Unigenes |
Current Unigene builds | |||||
[SGN-E546866] | SGN-U578937 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T347741 [Download][View] | Facility Assigned ID: TUS70H06_Q1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.975 | Expected Error Rate: 0.0048 | Quality Trim Threshold: 14.5 |